Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09140 1071 / 0 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) AT4G02460 148 / 1e-36 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) AT4G35520 96 / 4e-20 MLH3, ATMLH3 MUTL protein homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G130800 [exp] 152 / 6e-38 AT4G02460 936 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Potri.005G101900 [exp] 100 / 3e-21 AT4G35520 763 / 0.0 MUTL protein homolog 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033274 [exp] 1053 / 0 AT4G09140 1066 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10034734 [exp] 469 / 8e-154 AT4G09140 504 / 3e-167 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10030376 [exp] 163 / 2e-41 AT4G02460 963 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10007866 [exp] 158 / 4e-40 AT4G02460 763 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10016691 [exp] 91 / 1e-18 AT4G35520 360 / 8e-105 MUTL protein homolog 3 (.1) Lus10035985 [exp] 83 / 6e-16 AT4G35520 354 / 1e-102 MUTL protein homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF01119 [poplar] [flax] DNA_mis_repair DNA mismatch repair protein, C-terminal domain CL0025 [poplar] [flax] His_Kinase_A PF13589 [poplar] [flax] HATPase_c_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [poplar] [flax] PF16413 [poplar] [flax] Mlh1_C DNA mismatch repair protein Mlh1 C-terminus
Representative CDS sequence Show only first row Show all	>Potri.019G078700.2 pacid=42773187 polypeptide=Potri.019G078700.2.p locus=Potri.019G078700 ID=Potri.019G078700.2.v4.1 annot-version=v4.1 ATGGAAGCCGGTGAACACTCACCTCCAACATCACCGGAAACCGACCTAATGGAAATAAAAACAGAAAAAACACCATACTCACCATCGGAACCACCAAAAA TCCACCGTCTAGATGAGTCCGTGGTCAACCGAATCGCCGCCGGAGAAGTAATTCAACGCCCTGTTTCAGCCATCAAAGAACTAGTAGAAAACAGCCTCGA CGCGCACTCTACCTCTATAAACGTCGTTGTTAAAGACGGTGGCCTTAAACTCATTCAAGTCTCCGATGACGGCCACGGCATTCGCCGTGAGGATTTGCCT ATATTATGCGAGAGGCATACGACGTCGAAGCTGACTAATTACGAGGATTTACAGTCGATTAAGTCAATGGGGTTCAGAGGAGAGGCATTGGCCAGCATGA CTTATGTAGGTCATGTGACTGTCACTACTATTACTCCAGGAAAATTGCATGGTTACAGGGTTTCATATAGAGATGGGGTAATGGAGGATGAGCCTAAGCC TTGTGCTGCAGTTAAAGGGACGCAGATAATGGTAGAAAACTTGTTCTATAACATGATTGCTAGGAGAAAGACATTCCAGAATTCTTCAGATGATTATTCC AAAATAGTGGACTTGCTAAGCCGATTTGCGATTCATCATATTAACGTGAGCTTTTCTTGCAGAAAGCATGGAGCATCCAGAGCAGATGTCCACTCAGTGA CCACATCATCAAGGCTTGATTCCATCAGATCTGTTTATGGAGTTTCTGTTGCTCTCAATCTAATGAAAATAGAAGTTCCAGACAGTGATCCTTCAAGTTC AGTTTTTAATATGGATGGACTCATTTCCAATTCAAATTATGTGGCGAAGAAAACAACAATGGTTCTTTTTATCAATGATAGACTAGTGGAATGCACTGCT TTAAAGAGAGCTATCGAAATTGTTTATGCTGCTACCTTACCAAAAGCTTCAAAACCTTTCATATACATGTCAATAGTATTGCCACCTGAGCATGTTGATG TGAATGTGCATCCAACAAAGAGAGAGGTAAGCCTTCTGAACCAAGAATTCATTATTAACACGATACAATCTGCTGTTGAATCAAAATTGAGGAACTCAAA CGAGGCTAGGACATTTCAAGAACAGACGTTGGATTCCTCTCCAAGTGTTACTTTAAGTGCAAAAAAGGATTCAAATGTTAACCCCTCACCCTCGCCTTAT GGGTCAAAATCGCAAAAAGTTCCAGTGAATAAAATGGTAAGAACTGATGCATCGGATCCTGCTGGAAGGCTGCATGCCTATTTGCAAGCCAGGCCTGTTG ATAATCTTGAAGGGAATTCTAGCTTGGCAGCTGTGAGGTCTTCAGTTAGACAAAGAAGAAACCCTAAGGAAAGTGCAGATATTTCTTCTGTTCAGGAGCT TGTTAATGATATTGATGGAAACTGTCATTCAGGTCTGCTGGATATTGTCAGAAACTGCACATATATTGGAATGGCAGATGATGTTTTTGCATTGCTTCAG TATAAAACGCAGCTGTATCTTGCAAATGTAGTGAACTTAAGCAAAGAGCTCATGTATCAGCAAGTTCTACGACGATTTGCTCATTTCAATGTCATACAAC TGAGTGATCCAGCCCCTCTTAGATTGCTCATTATGTTGGCATTGAAGGAAGAAGACTTGGATCTAGAATCCAACGAAAATGAAGACCTGAGAGAGAAGAT TGCAGAAATGAACACTGAACTGCTAAAGGATAAGGCAGAACTTCTAGAGGAGTATTTCTGCATATACATTGACTCACATGGGAATTTGTCTCGGCTTCCT GTCATACTTGACCAATATACACCTGACATGGATCGGATCCCTGAATTTGTACTTAGTTTGGGAAATGATGTTGATTGGGAGGATGAAAAGAATTGCTTTC AAACAATTGCGGCTGCTGTTGGGAACTTCTATGCCATCCATCCTCCTCTATTGCCCAGTCCCTCAGGTGATGGTTTACAATTTTACAGAAGAAGGAAACC TGAAAAGAATCCCGATGATAAAGAAAAAGCAACTGACATAGATGTTGAAATGGAGGATGAACTTGAGCATGAATTGCTGTCTGAGGCAGAGACTGCATGG GCCCAGCGTGAATGGTCAATACAGCATGTATTATTTCCTTCCATGAGACTCTTTTTAAAGCCACCAACTTCAATGGCTACAAATGGGACATTTGTTCAGG TAGCTTCATTGGAGAAGCTTTACAAGATATTTGAGAGATGCTAA
AA sequence Show only first row Show all	>Potri.019G078700.2 pacid=42773187 polypeptide=Potri.019G078700.2.p locus=Potri.019G078700 ID=Potri.019G078700.2.v4.1 annot-version=v4.1 MEAGEHSPPTSPETDLMEIKTEKTPYSPSEPPKIHRLDESVVNRIAAGEVIQRPVSAIKELVENSLDAHSTSINVVVKDGGLKLIQVSDDGHGIRREDLP ILCERHTTSKLTNYEDLQSIKSMGFRGEALASMTYVGHVTVTTITPGKLHGYRVSYRDGVMEDEPKPCAAVKGTQIMVENLFYNMIARRKTFQNSSDDYS KIVDLLSRFAIHHINVSFSCRKHGASRADVHSVTTSSRLDSIRSVYGVSVALNLMKIEVPDSDPSSSVFNMDGLISNSNYVAKKTTMVLFINDRLVECTA LKRAIEIVYAATLPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEFIINTIQSAVESKLRNSNEARTFQEQTLDSSPSVTLSAKKDSNVNPSPSPY GSKSQKVPVNKMVRTDASDPAGRLHAYLQARPVDNLEGNSSLAAVRSSVRQRRNPKESADISSVQELVNDIDGNCHSGLLDIVRNCTYIGMADDVFALLQ YKTQLYLANVVNLSKELMYQQVLRRFAHFNVIQLSDPAPLRLLIMLALKEEDLDLESNENEDLREKIAEMNTELLKDKAELLEEYFCIYIDSHGNLSRLP VILDQYTPDMDRIPEFVLSLGNDVDWEDEKNCFQTIAAAVGNFYAIHPPLLPSPSGDGLQFYRRRKPEKNPDDKEKATDIDVEMEDELEHELLSEAETAW AQREWSIQHVLFPSMRLFLKPPTSMATNGTFVQVASLEKLYKIFERC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Potri.019G078700 [exp]	0	1
AT2G19180			unknown protein		Potri.018G142900 [exp]	9.21	0.6970
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	14.69	0.6495
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	32.48	0.6512
AT5G11790		NDL2	N-MYC downregulated-like 2 (.1...		Potri.018G054900 [exp]	37.50	0.6007
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Potri.001G088000 [exp]	47.59	0.6198	Pt-HEN3.1
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	54.11	0.6205
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Potri.008G075800 [exp]	68.70	0.5487
AT4G39690			unknown protein		Potri.005G080200 [exp]	71.33	0.5400
AT3G61790			Protein with RING/U-box and TR...		Potri.002G171500 [exp]	80.10	0.5918
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	92.95	0.5218

Compare expression of checked genes

Potri.019G078700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.