Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72175 259 / 2e-89 RING/U-box protein with domain of unknown function (DUF 1232) (.1) AT1G22510 236 / 3e-80 RING/U-box protein with domain of unknown function (DUF 1232) (.1), RING/U-box protein with domain of unknown function (DUF 1232) (.2) AT4G33940 141 / 8e-42 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G105400 [exp] 302 / 3e-106 AT1G72175 263 / 5e-91 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.004G143900 [exp] 134 / 2e-39 AT4G33940 221 / 2e-72 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009529 [exp] 283 / 2e-98 AT1G72175 261 / 5e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10020349 [exp] 282 / 3e-98 AT1G72175 261 / 8e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10027921 [exp] 153 / 1e-46 AT4G33940 251 / 3e-84 RING/U-box superfamily protein (.1) Lus10012062 [exp] 150 / 2e-45 AT4G33940 252 / 2e-84 RING/U-box superfamily protein (.1) Lus10014366 [exp] 139 / 3e-39 AT4G33940 189 / 2e-57 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06803 [poplar] [flax] DUF1232 Protein of unknown function (DUF1232)
Representative CDS sequence Show only first row Show all	>Potri.019G078800.7 pacid=42773535 polypeptide=Potri.019G078800.7.p locus=Potri.019G078800 ID=Potri.019G078800.7.v4.1 annot-version=v4.1 ATGGATGGACCTCCAGTGAATGATTTTTGCTCCATATGCCATGGACATTTCAACATTGCTTGCCAGGCCAATTGCTCTCATTGGTTTTGTGGTGATTGTA TTATGCTTGTTTGGCATCATGGATCCGTACTCCAGCCATGTAAATGTCCACTGTGTCGTCGGCAGATTACATTGTTGGTTCCTGGTGAAGCTTCATTAAG GGAGCGCAGTGATCCTGATGTTGCTGAGGTTCTTGGAAAAATTGAAAGATACAATCATCTTTTTGGTGGAAATACCAGTGGTCTCATTCAGAGAATGCAA GACCTTCCATTTCTTCTCCGGAGGTTGTTGCGAGAAATAATGGATCCCCAAAGGTCTCTTCCTTTGGTCATCAGGGCGCGCGTCTATATTGCAGTGGTGC TAAGTGCCATCTACGTCATCAGCCCTATAGACATTATTCCAGAAGGAATTTTGGGAATAGTTGGTCTCCTGGATGATCTCCTCGTAGTGCTCATTTGCTT TCTTCATGTTGCTGCTATCTACCGGGCAGTATTGCATTATCGTCATGGAGGTTCTTGA
AA sequence Show only first row Show all	>Potri.019G078800.7 pacid=42773535 polypeptide=Potri.019G078800.7.p locus=Potri.019G078800 ID=Potri.019G078800.7.v4.1 annot-version=v4.1 MDGPPVNDFCSICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLVPGEASLRERSDPDVAEVLGKIERYNHLFGGNTSGLIQRMQ DLPFLLRRLLREIMDPQRSLPLVIRARVYIAVVLSAIYVISPIDIIPEGILGIVGLLDDLLVVLICFLHVAAIYRAVLHYRHGGS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72175			RING/U-box protein with domain...		Potri.019G078800 [exp]	0	1
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	4.35	0.7910
AT1G53760			unknown protein		Potri.001G161800 [exp]	14.49	0.7259
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Potri.014G159400 [exp]	14.83	0.7329	AGO902
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Potri.010G211000 [exp]	15.68	0.7444
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	16.91	0.7691
AT1G28410			unknown protein		Potri.004G048500 [exp]	18.73	0.7264
AT1G33265			Transmembrane proteins 14C (.1...		Potri.011G147000 [exp]	19.36	0.7489
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	21.74	0.7315
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Potri.018G086800 [exp]	22.62	0.6995
AT1G80500			SNARE-like superfamily protein...		Potri.001G043400 [exp]	22.71	0.7309

Compare expression of checked genes

Potri.019G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.