Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35420 333 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G23600 74 / 3e-15 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G23570 70 / 1e-13 alpha/beta-Hydrolases superfamily protein (.1) AT2G32520 57 / 3e-09 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G105634 [exp] 218 / 1e-69 AT1G35420 89 / 2e-20 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G201400 [exp] 80 / 3e-17 AT3G23600 352 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.007G112700 [exp] 72 / 1e-14 AT3G23600 276 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G155200 [exp] 53 / 1e-07 AT2G32520 409 / 4e-146 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016930 [exp] 231 / 5e-73 AT1G35420 214 / 2e-66 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000375 [exp] 174 / 2e-54 AT1G35420 165 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035767 [exp] 84 / 7e-19 AT3G23600 340 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027997 [exp] 74 / 4e-15 AT3G23600 267 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030039 [exp] 66 / 2e-12 AT2G32520 425 / 5e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10035287 [exp] 66 / 5e-12 AT2G32520 424 / 4e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10004436 [exp] 58 / 1e-09 AT3G23570 222 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10000664 [exp] 47 / 2e-05 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) Lus10000665 [exp] 42 / 0.0005 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000668 [exp] 42 / 0.0005 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.019G079000.1 pacid=42773010 polypeptide=Potri.019G079000.1.p locus=Potri.019G079000 ID=Potri.019G079000.1.v4.1 annot-version=v4.1 ATGGGATTTGTCTCGATCTCCTCCTTTGCATTCTCAATCACCACCACCACCACAGGCACCACCAGAAAGCCATCACTCCATCACCACTACAGCCACAGCA ACCGGCTTCACTTCCTTTCAAAGTGTTCTCCTCTTCTTCCTAGAAAATGCAGTGTAAACCTTTTGAGATCATGTAGAGGGAACACTGCCTGCAGAGCTTC TTCCAGCCTATTGAAAATCGAAGATGATATAGATGATGAAGCTTGCGAGTTAGTCAGTGGATTGGAAATTTCAATAGGGGAAGGTGATGATAGCATCGAT GCTTATCTGTTAAAGGCAATGAAGAATAATAATGGAACTGGTATATTGCTCTTGTCTGATATTTTTGGGTTCGAAGATTCATCAACAAGAGACTTTGCGT ATCGTGTCGCCTGTAATGGCTACAACGTTCTAATTCCAGACTTGTTTCGTGGGGATCCGTGGACGAAAGACCAGCCGATGACTTTGTTGGAAAAATGGAT CACAAAACAGGAACCACAGAGGGTCGCAAAAGACATTGATACATCAGCAAAATGGATGGTTGATGAATTTTTAGCTGCAGGAATCTCAAAGAAGCTTGGT ATAATTGGATTTTGCTTCGGAGGAGGCCGAGTGATAGATGCGTTATCCAGAGATCAGGGAGCATTGTTTGGCGTTGGGGTCTCCTTCTATGGTACAAGGA TGAACCCATCTTTAGCCTCCTCCATAAAGGTTCCTGTGTTGTTTATTTCAGGAGATAATGACCCTCTATGCACAGTCAGTGTCTTGAAAGATTTTGAGAA GAGCATTGGCCAGGGATCAAAGGTGGTGATTTTTGAGGGAAGAGGTCATGGTTTTGCCCATCGACCAAACTCTCCTGAAGAAGACAAAGATGCAGATGAG GCTTTTACAATCATTAGAAAATGGCTGCATGATGGTTTGGTTTTACAAAACTGA
AA sequence Show only first row Show all	>Potri.019G079000.1 pacid=42773010 polypeptide=Potri.019G079000.1.p locus=Potri.019G079000 ID=Potri.019G079000.1.v4.1 annot-version=v4.1 MGFVSISSFAFSITTTTTGTTRKPSLHHHYSHSNRLHFLSKCSPLLPRKCSVNLLRSCRGNTACRASSSLLKIEDDIDDEACELVSGLEISIGEGDDSID AYLLKAMKNNNGTGILLLSDIFGFEDSSTRDFAYRVACNGYNVLIPDLFRGDPWTKDQPMTLLEKWITKQEPQRVAKDIDTSAKWMVDEFLAAGISKKLG IIGFCFGGGRVIDALSRDQGALFGVGVSFYGTRMNPSLASSIKVPVLFISGDNDPLCTVSVLKDFEKSIGQGSKVVIFEGRGHGFAHRPNSPEEDKDADE AFTIIRKWLHDGLVLQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015400 [exp]	1.00	0.9809
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Potri.019G034000 [exp]	1.73	0.9803
AT2G35130			Tetratricopeptide repeat (TPR)...		Potri.012G123600 [exp]	2.23	0.9740
AT3G15840		PIFI	post-illumination chlorophyll ...		Potri.001G204300 [exp]	2.82	0.9804
AT5G23240			DNAJ heat shock N-terminal dom...		Potri.001G347600 [exp]	3.46	0.9748
AT1G51100			unknown protein		Potri.011G132900 [exp]	4.58	0.9719
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.001G249800 [exp]	5.19	0.9697
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.016G006800 [exp]	7.74	0.9686
AT1G27510			Protein of unknown function (D...		Potri.015G075000 [exp]	8.36	0.9694
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.019G093400 [exp]	8.66	0.9563

Compare expression of checked genes

Potri.019G079000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.