Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78950 523 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G66960 501 / 2e-173 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78960 499 / 1e-172 ATLUP2 lupeol synthase 2 (.1) AT1G78955 498 / 5e-172 CAMS1 camelliol C synthase 1 (.1) AT1G78970 458 / 9e-157 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT4G15370 458 / 1e-156 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1) AT5G36150 449 / 2e-153 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT4G15340 442 / 3e-150 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1) AT1G78500 435 / 2e-147 ATPEN6 Terpenoid cyclases family protein (.1) AT5G42600 432 / 2e-146 MRN1, ATPEN5, MRN marneral synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001500 [exp] 712 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 694 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G002500 [exp] 564 / 0 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.014G002400 [exp] 538 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 527 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 502 / 6e-174 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 421 / 5e-142 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.004G015600 [exp] 410 / 8e-138 AT1G78960 907 / 0.0 lupeol synthase 2 (.1) Potri.004G132500 [exp] 409 / 2e-137 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 469 / 3e-161 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 451 / 3e-154 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 432 / 2e-146 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10016441 [exp] 431 / 2e-146 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10016440 [exp] 417 / 5e-142 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10032146 [exp] 417 / 8e-141 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 416 / 2e-140 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10016439 [exp] 402 / 1e-136 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10025684 [exp] 362 / 9e-120 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 361 / 1e-119 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00432 [poplar] [flax] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Potri.019G079150.1 pacid=42773636 polypeptide=Potri.019G079150.1.p locus=Potri.019G079150 ID=Potri.019G079150.1.v4.1 annot-version=v4.1 ATGTGGAGGCTAAAGATTGCAGAGAAAGGGAGCAACCCTTACATATTCAGCACAAATGATTTTGTTGGAAGGCAGATATGGGAGTATGATCCGAATGCTG CAACTCCTGAAGAGCGTGAACAAGTGGAAGAGGCTCGCCGGAATTTTACCAAAAACCGCTCTAAGGTCAAGCCCAGCTCTGACCTTCTTTGGCAATATCA GATTCTGAGGGAGAAAAATTTCAAGCAAACAATTCCTGCAGTGAGAGTTGAGGATGGTGAGGAGGTGACATATGAAAAGACCACAGCAGCATTAAGGAGG TCAGCCAACTTTTTTTCAGCTTTGCAGGCAAGCGATGGCCACTGGCCTGCTGAAAATTCTGGGGTCCTTTTTTTCCTTCCTCCTTTTGTGTTTTGCTTCT ACATTACTGGGCATCTCAACACCATGTTCCCTCCTGAGTACCGCAAAGAAATCTTTCGTTACATCTACAATCATCAGAATGAAGATGGTGGGTGGGGTCT GCACATAGAAAGTCACAGCAACATGTTTTGCACAACCTTCAGCTACATTTGTCTACGCATGCTTGGGGTAGGACCAGATGAGGAAGCTTGTGCAAGAGGA AGAAAATGGATTCTTGACCGTGGTGGTGTCACTTCCATTCCCTCTTGGGGCAAGACTTGGCTTTCGATTCTTGGTCTATTTGACTGGCTTGGATGTAACC CAATGCCCCCAGAGTTTTGGATTCTTCCTTCTACCCTTCCTATTCATCCAGCAAAAATGTGGTGCTATAGTCGATTGGTTTACATGCCAATGTCATATCT CTATGGAAAAAGATTTGTAGGGCCAATTACACCTCTGATTCTGTCACTGAGAGAAGAACTGTACCTTCAGCCTTACGAAAGTGTCAAGTGGAAGCATGTC AGACATTTATGTGCAAAGGAGGATCTTTACTATCCACATACCTTGATTCAGGACTTCCTTTGGGATAGTCTGTATTTGATGTCCGAACCTCTTCTTACTC GCTGGCCCTTTAACCAGTTGATCAGAAAGAAGGCTCTTGAAGTGACAATGAAGCACATTCATTATGAAGATTAG
AA sequence Show only first row Show all	>Potri.019G079150.1 pacid=42773636 polypeptide=Potri.019G079150.1.p locus=Potri.019G079150 ID=Potri.019G079150.1.v4.1 annot-version=v4.1 MWRLKIAEKGSNPYIFSTNDFVGRQIWEYDPNAATPEEREQVEEARRNFTKNRSKVKPSSDLLWQYQILREKNFKQTIPAVRVEDGEEVTYEKTTAALRR SANFFSALQASDGHWPAENSGVLFFLPPFVFCFYITGHLNTMFPPEYRKEIFRYIYNHQNEDGGWGLHIESHSNMFCTTFSYICLRMLGVGPDEEACARG RKWILDRGGVTSIPSWGKTWLSILGLFDWLGCNPMPPEFWILPSTLPIHPAKMWCYSRLVYMPMSYLYGKRFVGPITPLILSLREELYLQPYESVKWKHV RHLCAKEDLYYPHTLIQDFLWDSLYLMSEPLLTRWPFNQLIRKKALEVTMKHIHYED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Potri.019G079150 [exp]	0	1
AT5G05800			unknown protein		Potri.011G125150 [exp]	20.49	0.8689
AT2G33880	HD	WOX9A, STIP, WO...	WUSCHEL related homeobox 9A, W...		Potri.011G061400 [exp]	26.72	0.8229
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G057250 [exp]	33.94	0.8336
					Potri.014G007300 [exp]	41.56	0.8626
AT5G34883			Protein of unknown function (D...		Potri.017G039175 [exp]	43.58	0.8230
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Potri.003G169600 [exp]	50.89	0.8328
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G009300 [exp]	51.02	0.8389
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152800 [exp]	59.24	0.8655
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.003G079100 [exp]	60.19	0.8483
					Potri.003G116550 [exp]	85.93	0.8227

Compare expression of checked genes

Potri.019G079150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.