Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78955 546 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 535 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78970 506 / 4e-175 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G78950 487 / 2e-167 ATLUP3 Terpenoid cyclases family protein (.1) AT1G66960 483 / 5e-166 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78500 466 / 5e-159 ATPEN6 Terpenoid cyclases family protein (.1) AT5G36150 455 / 4e-155 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT3G29255 453 / 7e-155 catalytics;intramolecular transferases (.1) AT5G48010 451 / 3e-153 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2) AT2G07050 442 / 4e-150 CAS1 cycloartenol synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001500 [exp] 753 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 751 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G002500 [exp] 665 / 0 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.014G002400 [exp] 569 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 561 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 544 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 471 / 4e-161 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 464 / 2e-158 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 449 / 7e-153 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016441 [exp] 496 / 2e-171 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 494 / 9e-171 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10013546 [exp] 484 / 2e-166 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10019674 [exp] 454 / 2e-159 AT1G78960 577 / 0.0 lupeol synthase 2 (.1) Lus10033355 [exp] 457 / 1e-155 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10032146 [exp] 441 / 1e-149 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 441 / 2e-149 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 379 / 3e-126 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10019673 [exp] 360 / 7e-124 AT1G78955 395 / 6e-133 camelliol C synthase 1 (.1) Lus10016439 [exp] 362 / 2e-120 AT1G78960 874 / 0.0 lupeol synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00432 [poplar] [flax] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Potri.019G079200.3 pacid=42774130 polypeptide=Potri.019G079200.3.p locus=Potri.019G079200 ID=Potri.019G079200.3.v4.1 annot-version=v4.1 ATGCTTTCATGTTGGGTGGAGGATCCAGATGGTGTTGCTTTCAAGAGGCATCTTGCTAGGGTTCCTGATTACTTGTGGGTTGGAGAAGATGGAATGAAGG TTCAGAGCTTTGGTAGTCAGTTGTGGGATGCTACGTTTTGTTTTCAAGCTTTGTATACTAGTGAGCTTGGTGAAGAAATCAAGCCTACACTGGCTAAATC CTTTGATTTCATCAAGAAATGTCAGGTTGTGGATAACCCAGCAGGTGACTTCAGGGGCATGTATCGTCACATTTCTAAAGGATCATGGACTTTCTCCGAT CAAGATCATGGATGGCAAGTTTCTGATTGTACTGCAGAAGCTTTAAAGTGTGTTCTCTTTGCTCAAATGTTGCCTACAGAAGACATTGGTGAGAAATTGG ATCCTCGGATGATTTTTGAAGCTGTCAATATCATTCTTTCACTACAGGGGCCAAGAGGTGGTCTTGCAGCCTGGGAGCCTATTCGCGGTGAAATGTGGTT AGAGAAACTCAATCCTATGGAATTCCTGGAGAACATAGTCATCGAGCACGACTATACTGAGTGCACATCATCTGCAATCCAAGTATTTGTGATGTTTATG AAGATGTACCCAGGACATAGGAATAAAGAAATTGAGACTTCTATTGCAAGAGCTGTCGAATATCTCGAAACGATTCAAATGCCAGATGGTTCATGGTATG GAAACTGGGGAGTTTGCTTCATTTACAGCACATGGTTTGCACTCGTTGGGCTTGCTGCTGCTGGAAAAACCTACTATAACAACCAAGCAATGCGTAGAGG CGTCGATTTTCTACTCAGGATACAGTCTCCAGATGGTGGCTGGGGTGAGAGCTACCTCGCTTGCCCAAACAAGATATACACACCTCTCGAAGAAAACCGA TCAACTTATGTGCACACAGCTTGGGCTATGCTTGGTTTGATTCATGCTGGCCAGGGGGATAGGGATCCCACTCCACTTCACCGTGCTGCAAAGTTGTTGA TCAATTCTCAAGCCGAAGATGGTAGCTATCCTCAGCAGGAAATTACTGGAGTTTTCAAGAATAACTGCACGTTACTCTACCCTATCTATAAGAATGTTTT CCCCTTGTGGGCTCTGGCAGAATACCGAAAAAATGTTCCATTGCCATCCAAGAAGCTTTGA
AA sequence Show only first row Show all	>Potri.019G079200.3 pacid=42774130 polypeptide=Potri.019G079200.3.p locus=Potri.019G079200 ID=Potri.019G079200.3.v4.1 annot-version=v4.1 MLSCWVEDPDGVAFKRHLARVPDYLWVGEDGMKVQSFGSQLWDATFCFQALYTSELGEEIKPTLAKSFDFIKKCQVVDNPAGDFRGMYRHISKGSWTFSD QDHGWQVSDCTAEALKCVLFAQMLPTEDIGEKLDPRMIFEAVNIILSLQGPRGGLAAWEPIRGEMWLEKLNPMEFLENIVIEHDYTECTSSAIQVFVMFM KMYPGHRNKEIETSIARAVEYLETIQMPDGSWYGNWGVCFIYSTWFALVGLAAAGKTYYNNQAMRRGVDFLLRIQSPDGGWGESYLACPNKIYTPLEENR STYVHTAWAMLGLIHAGQGDRDPTPLHRAAKLLINSQAEDGSYPQQEITGVFKNNCTLLYPIYKNVFPLWALAEYRKNVPLPSKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.019G079200 [exp]	0	1
AT2G23440			unknown protein		Potri.007G041400 [exp]	8.48	0.8514
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.007G132000 [exp]	8.66	0.8725
AT1G75640			Leucine-rich receptor-like pro...		Potri.005G235100 [exp]	12.36	0.8213
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.014G001500 [exp]	13.19	0.7810
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Potri.002G005800 [exp]	13.85	0.8601
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.001G098000 [exp]	19.62	0.8591
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.002G028500 [exp]	22.44	0.7935
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	31.78	0.8368
AT5G20635		AGG3	Arabidopsis G protein gamma su...		Potri.006G141100 [exp]	32.58	0.8372
AT1G14760		KNATM	KNOX Arabidopsis thaliana mein...		Potri.012G043400 [exp]	34.42	0.8236

Compare expression of checked genes

Potri.019G079200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.