Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 661 / 0 Major facilitator superfamily protein (.1) AT1G72125 596 / 0 Major facilitator superfamily protein (.1) AT1G72120 592 / 0 Major facilitator superfamily protein (.1) AT1G22550 585 / 0 Major facilitator superfamily protein (.1) AT1G22570 584 / 0 Major facilitator superfamily protein (.1) AT1G72140 582 / 0 Major facilitator superfamily protein (.1) AT1G72130 549 / 0 Major facilitator superfamily protein (.1.2) AT3G54450 469 / 2e-160 Major facilitator superfamily protein (.1) AT3G54140 422 / 4e-142 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 419 / 9e-141 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106600 [exp] 925 / 0 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 801 / 0 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 767 / 0 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 755 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 727 / 0 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 718 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 711 / 0 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 704 / 0 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 484 / 2e-166 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016932 [exp] 691 / 0 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 667 / 0 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 573 / 0 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 459 / 4e-156 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 451 / 4e-153 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 417 / 5e-140 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 414 / 2e-138 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10021132 [exp] 413 / 2e-138 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10034206 [exp] 414 / 4e-138 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10018207 [exp] 417 / 8e-138 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.019G079551.1 pacid=42774148 polypeptide=Potri.019G079551.1.p locus=Potri.019G079551 ID=Potri.019G079551.1.v4.1 annot-version=v4.1 ATGTCCACCTCCAATCATGCTCCAGAACTCCGAACTTCACTTTTATACGACATCGTTGATGGCTCTGTTGACCATAAGGGCCGACCCGTTTATAGATCCA ATTCTGGTGGATGGAGATCCGCAGGTTTCATCATAGGAGTGGAAGTTGCAGAGAGATTCGCGTATTACGGGATATCTTCCAACTTGATAACGTATTTGAC CGGTCCGTTGGGTCAGTCGACGGCTACTGCGGCAGAGAACGTGAATTTGTGGGCGGGGACTGCGACGTTGCTGCCGATATTAGGTGCTTTTGTTGCTGAT TCTTTTCTTGGCAGATACACAACTATCATCGTTGCTTCGCTTATCTATATCTTGGGACTTGGCTTGTTGACTCTATCGGCTCTACTTTCGACTCACACCG CTACTGATTTGCCATGTTCTCCTCCTCCATTTCAACTGATTTTGTTCTTCTTTGCTCTGTATTTAGTAGCGATTGGTGAAAGTGGGCACAAGCCTTGTGC TCAGGCGTTTGGAGCTGATCAGTTTGATGGGCACGACCCTCAGGAATCCAAAGCGAAGAGCTCCTTCTTCAATTGGTGGTATTGTTGTAAGAGTGGCGGA ACAATGGTAACATTACTGATTTTAAACTACATACAAGACAATCTTAACTGGGGTCTTGGATTTGGGATCCCTTGTGCTGCGATGCTTATTTCACTTGTCA TCTTCTTACTTGGCAGCAAGATGTATCGATATAGTGTAAAAGTGGACAAGAAAAGTGCATTTCTGAGGATTGGTTCGGTTTTTGTGTCTTCGATTAGGAA TTGGAGAACTACCCCTTCTGCCATAGCACTTGAAGAAGAAGCTCGTGGAACCCGACCTCACCCAAGTTCTGAGCAGTACATGTTCCTCAACAAAGCCCTG CTTGCACCAAACGGCTCAAAGGAAGATGGGAAGGTATGCAGCATCAGTGATGTTGAAGAAGCTAAGGCATTACTTAGGCTTGTTCCAATATGGACTTCAT GCTTAGTATTTGCTGTAGTGTTTGCGCAGAGATCAACTCTCTTTACTAAGCAAGCAGTTACGATGGATAGATCGATTTCACACGGTATCGATTTTCCAGC GGCTTCACTTCAATTCTTTATGAACCTATCCATTGTACTCTTCATTCCAATATATGACCGTGTCTTTGTTCCCTTAGCAAGAGCTTTAACCAGAAAATCC TCTGGCATTACAATGCTTCAGAGAATTGGAACTGGTATTTTTTTATCTGTCATGACTATGGTCATTGCTGCTCTCGTTGAGATGAAGAGGCTCAAAACTG CCCAAGAACATGGACTGGTTGATCTGCCAGATGTGACGATTCCAATGAGTGTTTGGTGGCTAATCCCTCAATATGTCTTGCTTGGCATTGCTGAATCGTT TACCATGGTGGGCTTGCAAGAATTTTTCTATGATCAGGTCCCCAGTGATCTGAGGAGCGTTGGTATTTCACTCAACCTTAGTATCTTTGGTACTGGAAAC TTTCTAAGCAGCTTTCTTGTATCTGTCATTGAGAAAACAACTGGTGGGAATGGCCGATACAGCTGGTTTGATAATAATCTGAATCGGGCTCATCTTGATT ACTTCTATTGGCTACTAGCTGGGATGAGCGTGGTGCAAATGGCTTTCTACGTTTATTCTGCAAAATCTTACATTTATAATAGGAGAGGTGCCGTGTAA
AA sequence Show only first row Show all	>Potri.019G079551.1 pacid=42774148 polypeptide=Potri.019G079551.1.p locus=Potri.019G079551 ID=Potri.019G079551.1.v4.1 annot-version=v4.1 MSTSNHAPELRTSLLYDIVDGSVDHKGRPVYRSNSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTATAAENVNLWAGTATLLPILGAFVAD SFLGRYTTIIVASLIYILGLGLLTLSALLSTHTATDLPCSPPPFQLILFFFALYLVAIGESGHKPCAQAFGADQFDGHDPQESKAKSSFFNWWYCCKSGG TMVTLLILNYIQDNLNWGLGFGIPCAAMLISLVIFLLGSKMYRYSVKVDKKSAFLRIGSVFVSSIRNWRTTPSAIALEEEARGTRPHPSSEQYMFLNKAL LAPNGSKEDGKVCSISDVEEAKALLRLVPIWTSCLVFAVVFAQRSTLFTKQAVTMDRSISHGIDFPAASLQFFMNLSIVLFIPIYDRVFVPLARALTRKS SGITMLQRIGTGIFLSVMTMVIAALVEMKRLKTAQEHGLVDLPDVTIPMSVWWLIPQYVLLGIAESFTMVGLQEFFYDQVPSDLRSVGISLNLSIFGTGN FLSSFLVSVIEKTTGGNGRYSWFDNNLNRAHLDYFYWLLAGMSVVQMAFYVYSAKSYIYNRRGAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22540			Major facilitator superfamily ...		Potri.019G079551 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003000 [exp]	2.00	0.8763
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	4.00	0.8393
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.005G170500 [exp]	4.24	0.8189	Pt-TGA3.2
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.001G122700 [exp]	5.19	0.8450
AT5G20260			Exostosin family protein (.1)		Potri.006G064850 [exp]	6.32	0.8162
AT1G78020			Protein of unknown function (D...		Potri.005G078600 [exp]	8.48	0.7936
AT4G15563			unknown protein		Potri.008G204800 [exp]	11.83	0.8290
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	11.95	0.8034
					Potri.007G016466 [exp]	13.74	0.7923
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034400 [exp]	15.42	0.7949

Compare expression of checked genes

Potri.019G079551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.