Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 547 / 0 Major facilitator superfamily protein (.1) AT1G22550 543 / 0 Major facilitator superfamily protein (.1) AT1G72140 520 / 4e-180 Major facilitator superfamily protein (.1) AT1G72125 520 / 5e-180 Major facilitator superfamily protein (.1) AT1G72120 519 / 9e-180 Major facilitator superfamily protein (.1) AT1G22570 499 / 9e-172 Major facilitator superfamily protein (.1) AT1G72130 474 / 1e-162 Major facilitator superfamily protein (.1.2) AT3G54450 384 / 8e-127 Major facilitator superfamily protein (.1) AT3G54140 349 / 2e-113 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 344 / 2e-111 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079600 [exp] 832 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 657 / 0 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 627 / 0 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 620 / 0 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 610 / 0 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 602 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 572 / 0 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 570 / 0 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 378 / 2e-124 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016932 [exp] 541 / 0 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 537 / 0 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 526 / 0 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 348 / 8e-113 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10018207 [exp] 352 / 2e-112 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 347 / 4e-112 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10035516 [exp] 345 / 1e-111 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10039521 [exp] 344 / 4e-111 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 343 / 1e-110 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10034206 [exp] 337 / 6e-108 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.019G079700.1 pacid=42773314 polypeptide=Potri.019G079700.1.p locus=Potri.019G079700 ID=Potri.019G079700.1.v4.1 annot-version=v4.1 ATGACAATATCTCATCTTTCAAATATTTCATCTGGCACCGAAAGAAGCAGTGCTGCTACTCCTCTAATTGAAGCGGGAGATGACAGTGTTAATGGCTCCG TTGACTACAAAGGCAACCCAGTTCACCGATCCACCTCAGGTGGCTGGAGATCAGCCTCTTTCATCACAGCTGTGGAAGTTGCAGAGAGGTTTGCATATTT TGGGATATCTTCGAACCTTATAACGTACTTGACGGGTCCTCTTGGTCAGTCCACGGCCAGTGCCGCCGCCAATGTGAATACGTGGTCTGGCACGGCCACG TTGCTGCCTCTTTTAGGAGCCTTTGTTGCCGACTCTTTTCTTGGCCGTTACCGGACTATTATTGCCGCTTCTCTCATCTACATCTTGGGACTAGGCTTGT TGACATTAGCAGCCACGCTAACATCTGACAGTGTTCATGACTTTCAAAACATCAAAGATGCCATGTTAAGTACTCCTTCTCAGTTTCAAGTAACATTGTT CTTCTTCTCTATATATCTAGTAGCATTTGGTCAAGGTGGGCACAAGCCCTGTGCTCTGGCATTTGGAGCTGATCAATTTGATGGACAGAATCCAAAGGAG AGTAAAGCTAAAAGCTCATTTTTCAATTGGTGGTACTTTTACTCATCAGTTGGTGTTAACTTAACTCTCGTCGTGATGGTCTACATCCAAGATAACCTCA GTTGGGCCCTTGGATTTGGAATCCCTTGTATCGTGATGACGACGACCCTGCTTATTCTCTTGCTTGGAAGCAGAACTTACAGGTATAGTGTCAATGGGAA TGAGAAAAATCCATTTATGAGAATTGGTCGGGTGATTCATAGAGCAATTAGAAACCGACACACAACTCCTCCTTCAGCTATGCCTGGTGAAGAGGATGCT TGCCAGTGGCATCAAAGTCACGAGCAATTCAAGTTCCTCAACAAAGCGTTGCTTGCACCAGATGGTTCATTGGTAGATCAAAATGTGTGCAGTGTCAGTG ATGTAGAAGACACAAAAGCGTTGTTGAAACTTGTCCCAATATGGATCACAAGTTTGGCTTATGCAACTGTGTTTGCACAGACCACAACTTTCTTCACAAA GCAAGGAGCTACGCTGGACAGAACAATTGTCTCAGGCTTCAAAATTCCAGCTGCTTCACTTCAAATCTTCATTGGGTTTGCCATCATTCTGTTTATCCCA GTATACGACCGCATTGTTGTCCCTATATCACGAGGTCTAACCCGGAAACCTTCTGGCATTACAATGCTTCAAAGAATTGGAACAGGAATGGTTTTCTCAG CAATTTCCATGGTAACTGCAGCTCTTGTTGAAATGAAAAGACTTGAAACTGCCAAAGAGCATGGGCTGGTTGATCTTCCAAATGTGACAGTTCCGATGAG TATTTGGTGGTTGGTTCCTCAGTATATCCTATGCGGTATTGCTGATGTGCTCACCATTGTTGGACTTCAAGAGTTTTGCTATGATCAGGTCCCAAAGGAA CTAAGGAGTCTGGGTATCTCACTCTACCTCAGTATCCTAGGAGTAGGAAACTTTTTAAGTAGCTTTCTTGTCTCTGTCATTGATGAAGCAACAAGTGGAG ATGGTCAAGAGAGCTGGTTCGCCAACAATCTCAACAGGGCACACCTTGATTATTTCTACTGGCTGCTTGCTGGTCTTAGTGCAGTGGGGTTCATAGCCTA CTTGTATTTTGCAAGATCATACATTTATAGCAGGGGAAACACAATTTAG
AA sequence Show only first row Show all	>Potri.019G079700.1 pacid=42773314 polypeptide=Potri.019G079700.1.p locus=Potri.019G079700 ID=Potri.019G079700.1.v4.1 annot-version=v4.1 MTISHLSNISSGTERSSAATPLIEAGDDSVNGSVDYKGNPVHRSTSGGWRSASFITAVEVAERFAYFGISSNLITYLTGPLGQSTASAAANVNTWSGTAT LLPLLGAFVADSFLGRYRTIIAASLIYILGLGLLTLAATLTSDSVHDFQNIKDAMLSTPSQFQVTLFFFSIYLVAFGQGGHKPCALAFGADQFDGQNPKE SKAKSSFFNWWYFYSSVGVNLTLVVMVYIQDNLSWALGFGIPCIVMTTTLLILLLGSRTYRYSVNGNEKNPFMRIGRVIHRAIRNRHTTPPSAMPGEEDA CQWHQSHEQFKFLNKALLAPDGSLVDQNVCSVSDVEDTKALLKLVPIWITSLAYATVFAQTTTFFTKQGATLDRTIVSGFKIPAASLQIFIGFAIILFIP VYDRIVVPISRGLTRKPSGITMLQRIGTGMVFSAISMVTAALVEMKRLETAKEHGLVDLPNVTVPMSIWWLVPQYILCGIADVLTIVGLQEFCYDQVPKE LRSLGISLYLSILGVGNFLSSFLVSVIDEATSGDGQESWFANNLNRAHLDYFYWLLAGLSAVGFIAYLYFARSYIYSRGNTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22540			Major facilitator superfamily ...		Potri.019G079700 [exp]	0	1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080400 [exp]	3.00	0.7944
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.003G113300 [exp]	12.12	0.7624
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	12.96	0.7785
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	13.03	0.7629
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.001G074100 [exp]	13.07	0.7386
AT1G67360			Rubber elongation factor prote...		Potri.003G173100 [exp]	15.87	0.7325
AT5G02420			unknown protein		Potri.006G084700 [exp]	19.74	0.7347
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Potri.009G030000 [exp]	20.19	0.6785
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	20.59	0.7670	PtrMTP2,Pt-MTP1.2
AT3G11760			unknown protein		Potri.008G015700 [exp]	24.81	0.7552

Compare expression of checked genes

Potri.019G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.