Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22620 1397 / 0 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT3G14205 696 / 0 Phosphoinositide phosphatase family protein (.1) AT3G43220 656 / 0 Phosphoinositide phosphatase family protein (.1.2) AT5G20840 647 / 0 Phosphoinositide phosphatase family protein (.1) AT1G17340 594 / 0 Phosphoinositide phosphatase family protein (.1) AT3G51460 120 / 5e-28 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT3G51830 120 / 5e-28 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT5G66020 119 / 8e-28 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G59770 97 / 3e-20 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G107950 [exp] 1665 / 0 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.018G063700 [exp] 715 / 0 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.003G071300 [exp] 713 / 0 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 707 / 0 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.006G136400 [exp] 696 / 0 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.005G100500 [exp] 136 / 3e-33 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 109 / 2e-24 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.013G128500 [exp] 83 / 6e-16 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014827 [exp] 1438 / 0 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10037446 [exp] 689 / 0 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10027650 [exp] 685 / 0 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10039913 [exp] 680 / 0 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10013184 [exp] 666 / 0 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10016941 [exp] 391 / 5e-129 AT1G22620 364 / 3e-119 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016697 [exp] 122 / 2e-28 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 119 / 1e-27 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10025267 [exp] 105 / 3e-23 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10009080 [exp] 97 / 2e-20 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF02383 [poplar] [flax] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Potri.019G080300.2 pacid=42773612 polypeptide=Potri.019G080300.2.p locus=Potri.019G080300 ID=Potri.019G080300.2.v4.1 annot-version=v4.1 ATGGCGAAATTGGATAATTCGAAATCCAAGCTCCCTCCTTACGTCTCCGCCAAAATCCACCCTTCCAACGACCCCGAAACGGATCACAACTCTTACACGC TCGAGAAATTTAGACTTTACGAGACTAGACAGAGATTTTATCTAGTTGGGAGTGATAGGAACAAGCAATTGTTTCGAGTATTGAAGATTGATCGATCAGA GCCGTCTGATCTCAATATCAGTGAAGACCCAGTTGTTTATTCACCGCAAGAAATAAAAAACTTGCTTCAGCGAATTGCTGAAGGGAATCGTGCCACTGGG GGGCTAAACTTTGTAGTGAAGGCTTATGGTATTGCAGGCTGCATTAAGTTTCTGGAGTCATATTATTTGATTCTAGTGACAAAGCGTCGGCAAATAGGAT TTATTTGTGGTCATGCGATATATGGCATTGATGAGAGCCAATTGATTACCATTCCCCATGTAACAGTTCAAACTGATGTGGCGCATTCTAAAGCTGAGCT AAGGTACAAAAAGCTATTATCTAGTGTAGATTTGACCAAGGATTTTTTCTTTAGCTACACATATCCTATAATGCAAAGCTTGCAAAAGAATGTGACCTCG ATGGGTGAAGATGGGATGCCATATGATAACATATTCGTCTGGAATGCATATCTAACACGAGCTGTTCGGTCTAGATGTGGTAATACTATTTGGACAATAG CATTAGTGCATGGAAATTTTAAGCAGATCAGGCTGTCGATCTTTGGGAGAGACTTTGGTGTTTCACTGGTTTCTAGACGCTCTCGGCATTTTGCTGGTAC ACGTTACTTGAAAAGGGGGGTTAATGATATGGGAAGAGTTGCAAATGATGTTGAAACAGAGCAAATTGTCCTTGATGAAGATGCTGGATCATGCAAGGGG AAAATGAGTTCTGTTGTGCAGATGCGTGGTTCAATTCCCCTTTTCTGGTCACAAGAAGCTTCACGATTTAGTCCTAAACCTGATATAATCTTGCAAAGGT ATGATCCTACCTATCAGGCGACCAAATTGCATTTTGAAGACTTGGTGAAGAGATATGGCAGTCCCATAATTGTGCTTAATTTGATTAAGACTGTTGAAAA AAGACCTAGAGAAATGATGCTAAGGCGTGAGTTTACAAATGCGGTTGTGTATCTGAACACGATTTTTCCAGAAGAAAAGCAACTTCAGTTTATCCATTGG GACTATCACAAGTTTGCAAAGAGCAAGTCTGCCAATGTTTTGGCTGTTTTGGGTGCTGTGGCAAGTCAAGCACTTGATTTGACTGGTTTTTACTATAGTG GTAAACCTAGCATTGTTAAGAGGAGAGCAAACCAACTTAGTCGAACAAGCACCGGAAGGGACGCTTCTCTTAGAGATCTAAGAGTCAATTCAGGGGATCT TGCAAGGATTGGAAGTAATAATGAGAATCTAAATTCTTTAATTAATTGGGATAGAGAGAGTGATTCTAGTCAACTGAAAAAACAAGATACGGTTGGTGCT GATGGGCCACGTTTTCAAGGTGGAGTTCTACGCACCAACTGCATTGACTGCTTGGATCGTACAAATGTTGCTCAGTATGCTTATGGTCTAGCGGCTTTAG GACGCCAGCTCCTTGCAATGGGTCTAACAGACATGCCCAAAGTCGATCCTGATAGTTCCATTGCTGCTGCTCTTATGGATATGTATCAAAGCATGGGGGA TGCTCTTGCCCAGCAATATGGTGGTTCTGCTGCTCATAACACTGTGTTCCTTGAGAGGCAGGGAAAGTGGAAAGCTACAACTCAATCTAGGGAGTTTATC AAGTCTATCAAGCGATACTACAGTAATGCATACACTGATGGTGAAAAGCAAGATGCAATAAATTTATTTCTTGGTTACTTTCAACCACAGGAAGGGAAAT CTCCTCTTTGGGAGTTAGATTCAGACTACTATCTTCATGTCTATGGGAATGCAATAGAAGAAGAAGACCCCTGTCCAGATGAGTGCAATTTGGAAACCAA TGCTAAGCCTGTAAGAGTTGGAATACCTCTTGCCCCTATTCCAGCTTGCAGGGAGGATTTTTCAAGAATGAAGTTGACATCATTTGATAAATTGATTGAC CGGACATGTAGTACTGTAAAGAATGTAAGACTTTATAGTGAACCTGATCACAGACCAGGTGGCAGTGCAGGAAATTCTGGTGTGGCTCCAGATGCAGCTG AAATACAGCTCAAAAGCCCAAATTGGCTTTTTGGCCAGAAAAAGTATGAAGAGAGTGGCAATGCCCCCAAGGCTGCTAAAAGTGAAATTGAAAATGGAGC ATCTCAGAAAGAGATTTATGTTGATGGTTACTCAGAATTAAATTTGCTTTCTTCTGTTGATGATATCAATGAAGAGGATATCTTCCAAAGGTACCTTGCA ATGACTTCAGTTGATGAAAGCGGCTGGTATGGTGGCACACTACTAGGTGATCAAGATGAAAGCAGTGAGATATATAAACATTATGCTGAATTGTGCCAGG GGCCAGCTATGGAGCCCTTCGAGCATGATCTGGATAGGGAGAAACACTATGCTGATGTTGTACGCATGAACGCAATTGATGTTTTAGATGATTCGGCTGT TGAAGCAGAGATGGAAGCTGCTCTCATGGATTATGATCGCATTGGTGCTGATCTTGGGATTGTACCAATGTCATGCAAATCCTTCGCTGCAGATCCAAGT TGGTTGACGAGATGGATTATTGGGGAAGAGAAGGTAGAAAAGATCTAA
AA sequence Show only first row Show all	>Potri.019G080300.2 pacid=42773612 polypeptide=Potri.019G080300.2.p locus=Potri.019G080300 ID=Potri.019G080300.2.v4.1 annot-version=v4.1 MAKLDNSKSKLPPYVSAKIHPSNDPETDHNSYTLEKFRLYETRQRFYLVGSDRNKQLFRVLKIDRSEPSDLNISEDPVVYSPQEIKNLLQRIAEGNRATG GLNFVVKAYGIAGCIKFLESYYLILVTKRRQIGFICGHAIYGIDESQLITIPHVTVQTDVAHSKAELRYKKLLSSVDLTKDFFFSYTYPIMQSLQKNVTS MGEDGMPYDNIFVWNAYLTRAVRSRCGNTIWTIALVHGNFKQIRLSIFGRDFGVSLVSRRSRHFAGTRYLKRGVNDMGRVANDVETEQIVLDEDAGSCKG KMSSVVQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKLHFEDLVKRYGSPIIVLNLIKTVEKRPREMMLRREFTNAVVYLNTIFPEEKQLQFIHW DYHKFAKSKSANVLAVLGAVASQALDLTGFYYSGKPSIVKRRANQLSRTSTGRDASLRDLRVNSGDLARIGSNNENLNSLINWDRESDSSQLKKQDTVGA DGPRFQGGVLRTNCIDCLDRTNVAQYAYGLAALGRQLLAMGLTDMPKVDPDSSIAAALMDMYQSMGDALAQQYGGSAAHNTVFLERQGKWKATTQSREFI KSIKRYYSNAYTDGEKQDAINLFLGYFQPQEGKSPLWELDSDYYLHVYGNAIEEEDPCPDECNLETNAKPVRVGIPLAPIPACREDFSRMKLTSFDKLID RTCSTVKNVRLYSEPDHRPGGSAGNSGVAPDAAEIQLKSPNWLFGQKKYEESGNAPKAAKSEIENGASQKEIYVDGYSELNLLSSVDDINEEDIFQRYLA MTSVDESGWYGGTLLGDQDESSEIYKHYAELCQGPAMEPFEHDLDREKHYADVVRMNAIDVLDDSAVEAEMEAALMDYDRIGADLGIVPMSCKSFAADPS WLTRWIIGEEKVEKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Potri.019G080300 [exp]	0	1
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Potri.006G049300 [exp]	3.16	0.7524
AT2G14680		MEE13	maternal effect embryo arrest ...		Potri.001G292800 [exp]	3.74	0.7233
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	5.09	0.6594
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.003G107000 [exp]	6.00	0.6797
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	13.74	0.7153
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	13.78	0.6992
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	15.74	0.6993
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	18.16	0.6984
AT5G06560			Protein of unknown function, D...		Potri.006G199000 [exp]	18.16	0.6618
AT2G37150			RING/U-box superfamily protein...		Potri.010G220700 [exp]	19.33	0.6460

Compare expression of checked genes

Potri.019G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.