Plant FIBer expression Database

Potri.019G080600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72060 74 / 3e-19 serine-type endopeptidase inhibitors (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02428 Prot_inhib_II Potato type II proteinase inhibitor family
Representative CDS sequence
>Potri.019G080600.1 pacid=42774352 polypeptide=Potri.019G080600.1.p locus=Potri.019G080600 ID=Potri.019G080600.1.v4.1 annot-version=v4.1
ATGGGTGGTGCACGACTTGCCGCCAGTGCAGTGGTTCTTCTTGTGCTCGGTGTAGTTTTACTCGGAGCCAGTGGTGGTAACTTGATTGCCAAGGCCTGTC
CTCTGTATTGCTTGGATGTGGATTACATGACTTGCGAGTCCTCCGGTGATAAGAAGCTTAATTCTGCTTGCAACTGCTGCTTGGCTCCCAAGAACTGCAC
CCTTCACCTTGCAGATGGAAGGATGGTCCAGTGTTGA
AA sequence
>Potri.019G080600.1 pacid=42774352 polypeptide=Potri.019G080600.1.p locus=Potri.019G080600 ID=Potri.019G080600.1.v4.1 annot-version=v4.1
MGGARLAASAVVLLVLGVVLLGASGGNLIAKACPLYCLDVDYMTCESSGDKKLNSACNCCLAPKNCTLHLADGRMVQC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72060 serine-type endopeptidase inhi... Potri.019G080600
[exp]
0 1
AT3G01140 MYB NOK, ATMYB106 NOECK, myb domain protein 106 ... Potri.008G089200
[exp]
5.83 0.9118
AT5G50570 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROT... Potri.003G169400
[exp]
10.39 0.8846
AT5G67060 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-hel... Potri.002G125000
[exp]
31.17 0.8730
AT1G71691 GDSL-like Lipase/Acylhydrolase... Potri.013G102500
[exp]
36.26 0.8714
AT1G68620 alpha/beta-Hydrolases superfam... Potri.003G192600
[exp]
40.84 0.8707
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.019G008100
[exp]
45.05 0.8681
AT1G73680 ALPHADOX2 ,ALPH... alpha dioxygenase (.1.2) Potri.012G049500
[exp]
46.73 0.8670
AT3G55090 ABCG16 ATP-binding cassette G16, ABC-... Potri.008G047900
[exp]
49.74 0.8664
AT5G15310 MYB ATMYB16, ATMIXT... myb domain protein 16 (.1.2) Potri.008G089700
[exp]
53.75 0.8663
AT5G15150 HD ATHB3, HAT7, AT... HOMEOBOX FROM ARABIDOPSIS THAL... Potri.017G081700
[exp]
55.99 0.8624

Potri.019G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.