Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35510 771 / 0 O-fucosyltransferase family protein (.1) AT2G01480 602 / 0 O-fucosyltransferase family protein (.1) AT1G14970 569 / 0 O-fucosyltransferase family protein (.1) AT1G38131 541 / 0 O-fucosyltransferase family protein (.1) AT1G38065 520 / 0 O-fucosyltransferase family protein (.1) AT4G24530 313 / 9e-100 O-fucosyltransferase family protein (.1) AT3G26370 309 / 4e-98 O-fucosyltransferase family protein (.1) AT4G38390 307 / 2e-97 RHS17 root hair specific 17 (.1) AT5G65470 304 / 1e-96 O-fucosyltransferase family protein (.1) AT1G76270 295 / 3e-92 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111500 [exp] 613 / 0 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 605 / 0 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 510 / 1e-175 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 501 / 4e-172 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 319 / 3e-102 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 307 / 8e-98 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 305 / 1e-96 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 303 / 5e-96 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 303 / 3e-95 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009450 [exp] 808 / 0 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 731 / 0 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 592 / 0 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 585 / 0 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 573 / 0 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 563 / 0 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 492 / 6e-171 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 489 / 3e-169 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 309 / 3e-98 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 310 / 4e-98 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.019G080900.1 pacid=42773355 polypeptide=Potri.019G080901.1.p locus=Potri.019G080900 ID=Potri.019G080900.1.v4.1 annot-version=v4.1 ATGCACGGCTACAGTCGCCTCGGAAACGCCGGGGCCACCGGCCGCACTGTCACAGCCACCCCCACGCCGTCTCCTCCTTCCTCGCCTCGCCTCCGTCACA GCCGCAGCAGCGGAAAGAGCAATTCGTCTCCTGGCGGTGGTTTTTCGGGGGGCGGTGGCGGTGGCGGTAGGGGAGGAGGGGGGAAGCAGCATGTGGTGGA GAGGTTGATGTTTATGGTGGTAACGGTGGTTTTGAGGCGAAGAGGATTGTTGCTGTTTGCGCCATTGCTGTATGTTGCAGGGATGGTTTTGTATATGGGT TCTTTGAATTTTGATGTTAATTTGAAAAATGGCGGTGTTGTTGTACGGAAACGTGCACCTCCTGGTACGGTGTACCGGAGTCCTAAGGTTTTTGACAAGC TTTGGCCGTATATGGAGGCTGAGAACAATGGCAGTCACAATGCGTTGATGACAGCATGGGATCCAAAACTGCGTCAAGCTTGGAAGCCCAGTGGCATCAG CAATTACTCTGATGCAGAATTGCCAGAGTCTAATGGTTTCCTTATAATTGAAGCGAATGGTGGTTTGAATCAACAACGCTTATCGATATGCGATGCAGTT GCTGTGGCAGGATTGCTGAATGCTACTTTGGTCATTCCATTTTTTCATCTAAATAGTGTTTGGAGAGATTCCAGTAAATTTGGAGAAATATTTGATGAAG ATTTCTTCATACACGCACTTAAGAATAATGTGAAAGTAGTTCGAGAGCTCCCAAGTGATGTACTTGAGCAGTTTGATAATAACATAAGCAGCATAGTAAA CTTAAGGGTAAAAGCTTGGTCCAGCCCGACCTACTATCTTCAGAAGGTTCTTCCAAAGCTGAGGCAGATGAGGGCAGTACGCATTGCACCTTTCTCCAAC AGGTTGGCACATGCAGTTCCTCCAAATATCCAGGGTCTTAGATGCTTAGCCAATTTTGAAGCCCTGAGGTTTTCAGAATCCATAAGAATGCTTGCAGAGC AGATGGTTGATCGGATGATCAAGAATAGTTCTCAAAGTGGGGGGAAATATGTCTCGGTGCATCTGCGGTTTGAAACGGATATGGTTGCATTTTCATGCTG TGAGTATGATGGCGGGGAAGAAGAGAAACGAGAGATGGATATTGCACGAGAAAGTGCTTGGAGAGGAAAATTTAGGAGAAGGGGTAGAGTAATAAGGCCA GGAGCAAATCGTGTGGATGGAAAGTGCCCTTTAACTCCATTGGAGGTAGGGATGATGCTTAGGGGAATGGGTTTTGATAATACCACCTCAGTATATGTCG CAGCAGGTAATATTTATAAAGCAGAGAAGTATATGGCTCCACTTAAACAGATGTTTCCACGTTTAGAAACAAAGGACACAATAGCTACCGCTGAAGAACT TGTGCCATTTAAGGGCCACTCGTCTAGGTTGGCTGCTCTTGACTACACGGTTTGCCTGCATAGTGAAGTCTTTGTCACAACACAAGGTGGGAACTTTCCA CACTTTTTAATGGGTCACAGGCGCTATTTGTATGGAGGGCATGCCAAGACAATCAATCCTGACAAGAGAAAGTTAGCTCTCTTATTTGATAAACCCACAA TCAGATGGGAGGTCTTCAAGCGACAGATGCAAAATATGCTTCGCCACAGTGATGTGAAGGGCTCTGAATTAAGAAAGCCCAGTGCATCACTTTACACATT TCCCATGCCAGATTGCATGTGTAAACAAACTGAAGCTAGACAACAAGACAGTGACAGTTGA
AA sequence Show only first row Show all	>Potri.019G080900.1 pacid=42773355 polypeptide=Potri.019G080901.1.p locus=Potri.019G080900 ID=Potri.019G080900.1.v4.1 annot-version=v4.1 MHGYSRLGNAGATGRTVTATPTPSPPSSPRLRHSRSSGKSNSSPGGGFSGGGGGGGRGGGGKQHVVERLMFMVVTVVLRRRGLLLFAPLLYVAGMVLYMG SLNFDVNLKNGGVVVRKRAPPGTVYRSPKVFDKLWPYMEAENNGSHNALMTAWDPKLRQAWKPSGISNYSDAELPESNGFLIIEANGGLNQQRLSICDAV AVAGLLNATLVIPFFHLNSVWRDSSKFGEIFDEDFFIHALKNNVKVVRELPSDVLEQFDNNISSIVNLRVKAWSSPTYYLQKVLPKLRQMRAVRIAPFSN RLAHAVPPNIQGLRCLANFEALRFSESIRMLAEQMVDRMIKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARESAWRGKFRRRGRVIRP GANRVDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGNIYKAEKYMAPLKQMFPRLETKDTIATAEELVPFKGHSSRLAALDYTVCLHSEVFVTTQGGNFP HFLMGHRRYLYGGHAKTINPDKRKLALLFDKPTIRWEVFKRQMQNMLRHSDVKGSELRKPSASLYTFPMPDCMCKQTEARQQDSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35510			O-fucosyltransferase family pr...		Potri.019G080900 [exp]	0	1
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	6.32	0.8788	Pt-KUP10.1
AT1G61900			unknown protein		Potri.004G016000 [exp]	9.16	0.8549
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	9.16	0.8721
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.006G114300 [exp]	10.95	0.8521
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187401 [exp]	15.87	0.8461
AT1G78790			unknown protein		Potri.012G090600 [exp]	16.58	0.8508
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	19.28	0.8633
AT5G16720			Protein of unknown function, D...		Potri.004G087600 [exp]	23.06	0.7972
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	25.29	0.8524
AT1G30760			FAD-binding Berberine family p...		Potri.001G463550 [exp]	25.80	0.7977

Compare expression of checked genes

Potri.019G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.