Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20230 249 / 4e-85 Ribosomal L18p/L5e family protein (.1) AT1G08845 112 / 4e-31 Ribosomal L18p/L5e family protein (.1.2) AT5G27820 71 / 1e-15 Ribosomal L18p/L5e family protein (.1) AT3G22450 73 / 3e-15 Ribosomal L18p/L5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G108700 [exp] 331 / 3e-117 AT3G20230 226 / 6e-76 Ribosomal L18p/L5e family protein (.1) Potri.013G029300 [exp] 119 / 8e-34 AT1G08845 295 / 1e-102 Ribosomal L18p/L5e family protein (.1.2) Potri.008G153100 [exp] 93 / 2e-22 AT3G22450 253 / 2e-82 Ribosomal L18p/L5e family protein (.1) Potri.007G100900 [exp] 64 / 3e-13 AT5G27820 155 / 3e-50 Ribosomal L18p/L5e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020797 [exp] 258 / 6e-88 AT3G20230 238 / 1e-80 Ribosomal L18p/L5e family protein (.1) Lus10007379 [exp] 255 / 6e-87 AT3G20230 234 / 3e-79 Ribosomal L18p/L5e family protein (.1) Lus10001727 [exp] 117 / 8e-33 AT1G08845 268 / 1e-92 Ribosomal L18p/L5e family protein (.1.2) Lus10004129 [exp] 115 / 2e-29 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10010558 [exp] 95 / 7e-23 AT3G22450 238 / 8e-77 Ribosomal L18p/L5e family protein (.1) Lus10006115 [exp] 94 / 7e-23 AT3G22450 231 / 6e-74 Ribosomal L18p/L5e family protein (.1) Lus10031487 [exp] 65 / 1e-13 AT5G27820 184 / 1e-61 Ribosomal L18p/L5e family protein (.1) Lus10015194 [exp] 65 / 1e-13 AT5G27820 184 / 1e-61 Ribosomal L18p/L5e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [poplar] [flax] S11_L18p PF00861 [poplar] [flax] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Potri.019G081000.1 pacid=42774690 polypeptide=Potri.019G081000.1.p locus=Potri.019G081000 ID=Potri.019G081000.1.v4.1 annot-version=v4.1 ATGTTTTTTACTCAAACGAGTGAGCCACCAGTTAGTCCCACGAAGAAGATGGCCTGCATAATATCTTCTTGTGCAGCTCTTTCAACTCAATCACTTCTCT CCGCCGACTCACTCCCAACTAGCTCAACTCGCTCAATCAAACCCAATTCCCTTTCATGGGGCTCTTCATTTCCCACCATACACATCTCCATCTCCATCAA CAACAACAACCCATCCTCTCTCAACAAGACTTCTTTCATTCAAGCTGCCTGGACAAGAAGATCTCGAGGTGAACTTGCCAAGAAACCTAACAAGAAATCG TGGAAACAGAGGACAGATATGTATATGAGGCCATTCTTACTAAATGTTTTCTTTTCAAGGAGATTTATCCAGGCAAAAGTGATGCACCGGGGAACAAGTA AAGTGGTATCAGTTGCTACCACAAATGCCAAGGATCTGAGACACAGTTTACCATCACTTACAGATCACAATGCCTGTAGAATTGTAGGGAAGCTCATTGC TGAGAGATCCAAGGAAGCTGATGTGTATGCAATGTCTTATGAACCTAGAAAAGATGAGCGGATTGAAGGTAAACTTGGAATTGTTATTGATACCATTAAG GAGAATGGGATCATATTTGTTTAA
AA sequence Show only first row Show all	>Potri.019G081000.1 pacid=42774690 polypeptide=Potri.019G081000.1.p locus=Potri.019G081000 ID=Potri.019G081000.1.v4.1 annot-version=v4.1 MFFTQTSEPPVSPTKKMACIISSCAALSTQSLLSADSLPTSSTRSIKPNSLSWGSSFPTIHISISINNNNPSSLNKTSFIQAAWTRRSRGELAKKPNKKS WKQRTDMYMRPFLLNVFFSRRFIQAKVMHRGTSKVVSVATTNAKDLRHSLPSLTDHNACRIVGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIK ENGIIFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.019G081000 [exp]	0	1
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.005G245700 [exp]	4.79	0.9592
AT2G42750			DNAJ heat shock N-terminal dom...		Potri.014G143400 [exp]	9.38	0.9571
AT2G39000			Acyl-CoA N-acyltransferases (N...		Potri.008G039300 [exp]	11.48	0.9443
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Potri.001G346700 [exp]	11.87	0.9572
AT1G30260		AGL79	unknown protein		Potri.011G081001 [exp]	12.64	0.9383
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Potri.008G153400 [exp]	15.65	0.9492
AT5G42070			unknown protein		Potri.003G141700 [exp]	16.30	0.9434
					Potri.001G027600 [exp]	17.32	0.9127
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096425 [exp]	19.39	0.9405
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Potri.002G066800 [exp]	19.44	0.9320

Compare expression of checked genes

Potri.019G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.