Plant FIBer expression Database

Potri.019G081600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72040 630 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G109400
[exp]
936 / 0 AT1G72040 639 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016950
[exp]
723 / 0 AT1G72040 606 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Lus10008257
[exp]
714 / 0 AT1G72040 605 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01712 dNK Deoxynucleoside kinase
Representative CDS sequence
>Potri.019G081600.1 pacid=42774486 polypeptide=Potri.019G081600.1.p locus=Potri.019G081600 ID=Potri.019G081600.1.v4.1 annot-version=v4.1
ATGCAGAAGTTACTACAAAGAAACCCCTCAAGCCCCCTCCTCTGTACTTCTGTTTCTACTAATTATTTTCTCTTTAAAAACAAAAACTATTCCTATATTT
CTCTTTCGATGCCAGCTGCTACTTATTTTTACAGTAATAGCTCCTCTTTAGCTGCCTCTTTAGCTAAAAAACTCACTCTCGCACCCGCACTGCCCTCCCG
CTTCTATTCAACGACTGCCTGCAGTGCTTCCCGTTGCGCTGTTGGGCTTATAACAAATACCCCAACCAGGTCATGGGTGGTGGCACGGCCGGCGTGGTAT
TGCACAGTGGCGGGTGGGCAGGAAGGGTCTGTTGTGACTGCTGCGGCTTTGGCGGCTGGTGAAGGTGTGCGGAGTAGTGGGGATGGAGATGAGGAAGGAA
AAGGTGAAAAGATTGAAAAGGGTGCGGAGGAAAAGGCCGCGAGGTTGAGTAGGAGGCAGAAGGGGACGGGTGGTGATATGGAGGGGAATGCTGATTTGTT
GATAATTCCTGGTGTAGGGCCGAAGAATTTGAGGAAATTGGTGGAGAAAGGGTTCACAGGAATGGCTGAGCTTAAGCAGTTTTATAAGGATAAGTTTCTT
GGAAAATCCAGCGAGACAATGGTTGAGTATTTACAGAGTTCTGTGGGAATTATTCACAAAAATCATGCTGAGAGCATAACAACTTTCATCAAAGAGAGCG
TGGATGAAGAGTTAAAGGATTTGAATTCTGATGCAAGGCCCAAACCTAAGAAGCGACTCACGTTTTGTGTTGAGGGAAATATCAGTGTTGGAAAGACAAC
ATTTCTTAAGAGAATAGTTAGTGATACAATTGAGCTACGAGATCTTGTTGAGGTGGTGCCTGAACCCATTGATAAGTGGCAGGATGTTGGGCCTGACCAC
TTTAATATACTTGATGCTTTCTATGCTGACCCATCAAGGTATGCCTATACCTTCCAGAATTATGTCTTTGTGACAAGGGTTATGCAGGAAAGAGAATCAT
CTGGTGGGCTGAAGCCACTCAGGTTGATGGAAAGAAGTGTCTTCAGCGACAGAATGGTCTTCGTACGAGCTGTGCATGAAGCAAAGTGGATGAATGAGAT
GGAGATCAGCATTTATGACTCCTGGTTTGATCCAGTTGTCTCAGTTTTGCCTGGGCTTATTCCTGATGCTTTCATCTACCTTAGAGCAAGTCCTGATACT
TGCCACAAGAGAATGATGCATAGGAAAAGAACTGAGGAAGGTGGAGTCAGCCTAGATTATCTTCGTGACTTGCATGACAAGCATGAGAGCTGGCTTTTCC
CATTTGAAAGTGGTAATCATGGGGTACTTTCTGTGAGTAAGCTACCTTTAAATTTGGATAATGCCCTACATCCTGATATAAGAGACAGGGTGTTCTATTT
GGAAGGTGATCATATGCACTCAAGTATTCAAAAGGTCCCTGCTTTGATTCTTGACTGTGAAGCCAACATTGACTTCAGCAGGGATGTTGAAGCCAAGGAG
AACTATGCGCGCCAAGTTGCAGAGTTTTTCAAACATGTGAAGAAAATGAAGGAAGTTCCATCTACAAAGGGTGACGGTGGTGTTAACCAGCGAAAGGTCG
TACTACCTCATGAAGGTGGATTGCTTTTACCAAACGGAGCACACTTCCCCGAGTCTGCTCTCAAATCCTTAGATTTTACTCGGGCAATGTCATTCATGTC
TGGCCAGTGA
AA sequence
>Potri.019G081600.1 pacid=42774486 polypeptide=Potri.019G081600.1.p locus=Potri.019G081600 ID=Potri.019G081600.1.v4.1 annot-version=v4.1
MQKLLQRNPSSPLLCTSVSTNYFLFKNKNYSYISLSMPAATYFYSNSSSLAASLAKKLTLAPALPSRFYSTTACSASRCAVGLITNTPTRSWVVARPAWY
CTVAGGQEGSVVTAAALAAGEGVRSSGDGDEEGKGEKIEKGAEEKAARLSRRQKGTGGDMEGNADLLIIPGVGPKNLRKLVEKGFTGMAELKQFYKDKFL
GKSSETMVEYLQSSVGIIHKNHAESITTFIKESVDEELKDLNSDARPKPKKRLTFCVEGNISVGKTTFLKRIVSDTIELRDLVEVVPEPIDKWQDVGPDH
FNILDAFYADPSRYAYTFQNYVFVTRVMQERESSGGLKPLRLMERSVFSDRMVFVRAVHEAKWMNEMEISIYDSWFDPVVSVLPGLIPDAFIYLRASPDT
CHKRMMHRKRTEEGGVSLDYLRDLHDKHESWLFPFESGNHGVLSVSKLPLNLDNALHPDIRDRVFYLEGDHMHSSIQKVPALILDCEANIDFSRDVEAKE
NYARQVAEFFKHVKKMKEVPSTKGDGGVNQRKVVLPHEGGLLLPNGAHFPESALKSLDFTRAMSFMSGQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72040 P-loop containing nucleoside t... Potri.019G081600
[exp]
0 1
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Potri.001G229000
[exp]
1.00 0.8877
AT2G45510 CYP704A2 "cytochrome P450, family 704, ... Potri.014G072300
[exp]
2.82 0.8738
AT5G63190 MA3 domain-containing protein ... Potri.012G091900
[exp]
7.48 0.8265
AT2G36690 2-oxoglutarate (2OG) and Fe(II... Potri.017G048700
[exp]
8.12 0.8596
AT3G47570 Leucine-rich repeat protein ki... Potri.013G020900
[exp]
8.48 0.8377 Pt-RGA.59
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300
[exp]
9.38 0.8691
AT3G50950 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.... Potri.006G014400
[exp]
9.89 0.8567
AT5G36930 Disease resistance protein (TI... Potri.001G066500
[exp]
11.48 0.8586
AT2G30990 Protein of unknown function (D... Potri.014G142800
[exp]
12.48 0.8679
AT4G38360 LAZ1 LAZARUS 1, Protein of unknown ... Potri.004G204600
[exp]
12.96 0.8444

Potri.019G081600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.