Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71990 587 / 0 ATFT4, ATFUT13, FUCTC, FT4-M, FUT13 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) AT3G19280 81 / 2e-16 FUCTA, FUCT1, ATFUT11, FUT11 fucosyltransferase 11 (.1) AT1G49710 73 / 1e-13 ATFUT12, FUCTB, FUCT2, FUT12 fucosyltransferase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G111200 [exp] 731 / 0 AT1G71990 576 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Potri.009G101500 [exp] 76 / 1e-14 AT3G19280 701 / 0.0 fucosyltransferase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006076 [exp] 582 / 0 AT1G71990 607 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Lus10009440 [exp] 580 / 0 AT1G71990 603 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1) Lus10019855 [exp] 75 / 2e-14 AT1G49710 650 / 0.0 fucosyltransferase 12 (.1) Lus10027899 [exp] 74 / 4e-14 AT3G19280 580 / 0.0 fucosyltransferase 11 (.1) Lus10002401 [exp] 72 / 3e-13 AT1G49710 607 / 0.0 fucosyltransferase 12 (.1) Lus10014060 [exp] 65 / 3e-11 AT1G49710 642 / 0.0 fucosyltransferase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00852 [poplar] [flax] Glyco_transf_10 Glycosyltransferase family 10 (fucosyltransferase) C-term
Representative CDS sequence Show only first row Show all	>Potri.019G082200.1 pacid=42774272 polypeptide=Potri.019G082200.1.p locus=Potri.019G082200 ID=Potri.019G082200.1.v4.1 annot-version=v4.1 ATGCAATTGAAACCCCTTAACACTTACACAATCACACTAATGCTGTTCTTTACAATCATTATCCTTTTTTTCTCAGGTTTTCTTGAATTTCCATCCATAG CAACCTCAATTACCTCACCTATTAAAGACCCAAACTTTCCTGTCAAAACAACACCAGATCCTTTCACTGATCTGTTCGTTGCTTTCAAGAAATGGGATTC TCAAGTGGGTTGTGTTCAGTTTAGAGAGAAACACAAGAATTTGGGGTCTTTTGGGTCGAAGGGGACAAATGGGTCTGCTTCTTTGCAAGTTGTTGATGGT GATGTGGGGTGTAGTGAGTTGAAGATGGAGCATGTTAATGTTTTGGTTAAAGGGTGGACTTGGATTCCTGGCAATCTGGATAATTTATATTCTTGTCATT GTGGGTTGAGTTGTTTGTGGACGAAGTCTTCTGTTCTTGCTGACAAGCCTGATGCCTTGTTGTTTGAAACAACTACTCCTCCACTTCAGAGGCGCAATGG GGATCCCCTTCGTGTTTACATGGATCTCGAGGCCGGCAGGAAACGCTCTGGTCGTGAGGATTTATTTATCAGCTATCATGCAGAAGATGATGTTCAGTCA ACATATGCTGGTGCACTCTTTCATAATGGTCGAAATTATCACGTGTCTCGTCGTAAGGACAATGATACACTTGTTTATTGGTCTTCGTCACGCTGTCTTG CTGATAGAAACCGGCTGGCTAAGAGCCTTCTCAGCTTGCTGCCTCACCATTCCTTTGGCAAGTGCTTGAACAATGTTGGTGGGCTAGACATGGCCCTTTC TTTCTATCCTGAGTGTGCCAATGATGCCAGTCTCAAACCAAAATGGTGGGATCATCTGCATTGTGCCATGTCTCATTATAAGTTTGTTCTTGCCATTGAA AACACCTGGACAGAGAGTTACGTGACCGAAAAGCTATTTTATGCCTTAGACTCTGGTTCAGTTCCAATATACTTTGGCGCACCCAATGTTTTGGACTTTG TTCCTCCACATTCAATAATAGATGGGAATAAATTTAACTCCATGGAGGAATTGGCTTCTTATGTCAAGGACCTCGCTAATGACCCTGTAGCCTATGCTGA ATACCATGCATGGAGAAGATGTGGTGTATTGGGTAATTATGGAAAGACTCGGGCAGCAAGCCTTGACACGCTGCCTTGCCGATTATGTGAGGCTGTTAGC CGGAAAGGAGGTAGAAATGCTAGAGCTTAG
AA sequence Show only first row Show all	>Potri.019G082200.1 pacid=42774272 polypeptide=Potri.019G082200.1.p locus=Potri.019G082200 ID=Potri.019G082200.1.v4.1 annot-version=v4.1 MQLKPLNTYTITLMLFFTIIILFFSGFLEFPSIATSITSPIKDPNFPVKTTPDPFTDLFVAFKKWDSQVGCVQFREKHKNLGSFGSKGTNGSASLQVVDG DVGCSELKMEHVNVLVKGWTWIPGNLDNLYSCHCGLSCLWTKSSVLADKPDALLFETTTPPLQRRNGDPLRVYMDLEAGRKRSGREDLFISYHAEDDVQS TYAGALFHNGRNYHVSRRKDNDTLVYWSSSRCLADRNRLAKSLLSLLPHHSFGKCLNNVGGLDMALSFYPECANDASLKPKWWDHLHCAMSHYKFVLAIE NTWTESYVTEKLFYALDSGSVPIYFGAPNVLDFVPPHSIIDGNKFNSMEELASYVKDLANDPVAYAEYHAWRRCGVLGNYGKTRAASLDTLPCRLCEAVS RKGGRNARA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Potri.019G082200 [exp]	0	1
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.010G111800 [exp]	7.48	0.5651
AT4G16710			glycosyltransferase family pro...		Potri.005G036500 [exp]	7.61	0.5902
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.007G055800 [exp]	26.38	0.4933
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.001G436100 [exp]	29.66	0.5402	Pt-AERO1.1
AT4G21610		LOL2	lsd one like 2 (.1)		Potri.004G043100 [exp]	30.16	0.5396
AT5G39890			Protein of unknown function (D...		Potri.017G079400 [exp]	35.00	0.5143
AT3G02550	AS2	LBD41	LOB domain-containing protein ...		Potri.004G100100 [exp]	39.93	0.4936	Pt-LBD41.1
AT3G05550			Hypoxia-responsive family prot...		Potri.013G015400 [exp]	64.27	0.4846
AT1G31910			GHMP kinase family protein (.1...		Potri.003G098100 [exp]	76.40	0.4750
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.018G101700 [exp]	98.66	0.4397	GER1.3

Compare expression of checked genes

Potri.019G082200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.