Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35660 1401 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006047 [exp] 1670 / 0 AT1G35660 1470 / 0.0 unknown protein Lus10028705 [exp] 1441 / 0 AT1G35660 1215 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G083100.1 pacid=42773056 polypeptide=Potri.019G083100.1.p locus=Potri.019G083100 ID=Potri.019G083100.1.v4.1 annot-version=v4.1 ATGGAGATGGAGAAACAATCACCGTCACCGTCGCCGCCGTCTCTGCAATCAGAATCGAGCTCGTTAAGAGAACTACAACGCGTCGGTACACTGGAAATCG CTAGACCTAAACCACCTGTCGGTTTTCTCTGCGGTTCTATCCCTGTTCCTACTGACAAATCTTTCCACGCCTTCAATTCCGCTCTCGTTCCTTCTTCTCG CCAAACATGTAGTGTTAGTGCACCGAGGTACCGGATGTTGCCGACGGAGACTGATTTGAATACGCTCCCTGTGGTTTCTAACTTGCCGGAGAAAGTTCTT CCGATTAGTGCTGCTGTACAGTCTAAGTTCAAAGGAGAATTTCCTTGGGATGCTGATGCCATCTCATCAAATCTTACAAGGAAATGTGAAGCCCTTGCTG TATCTGGTTTGGTGGAGTATGGAGATGAAATAGACGTGATTGCTTCAGCTGACATTCTTAAGCAGATCTTTAAAATACCATATTCCAAGGCTCGATTATC AATTGCAGTACGCCGTATTGGACAGACTCTTGTTCTCAACAAAGGACCCGATGCAGAAGAGGGAGAAAGGTTGGTCAGAAGACATAAAAATCAATCAAAA AAATGCACAGATCAATCTTTATTTTTGAATTTTGCTATGCACTCAGTTAGAATGGAGGCTTGTGATTGTCCGCCCACCCATCCTGCTTCATCAACGGGGC AATCAAATTCATCTGTTCTTCCAGGGGGAGATGCATCCCAGTTTGTGGGGCAGAGTGATGATGTCACTAGAAATGAAGGATTCAACCATTGCTCAGAATA TCCACATGTTAAACAGGATAACTTTTTTTGGGAGAGTAAAAAAAATAAAAGAAATAAGGGCCATCATCCTGTAAAGAAGTCTTCGCACCTTGGTGAGAAG CCCAGAAGCTCAATGCAAGAAACTGAAAAGCATAAAAGAGTCAGTAATGATGGATTTCTAAGGGTTTTATTTTGGCAATTTCACAATTTCCGCATGCTTT TAGGAAGTGACTTGCTTCTGTTCAGTAATGAAAAATACGTTGCTGTCAGCTTGCATTTATGGGATGTAACTCGACAGGTCACTCCGTTAACTTGGCTTGA AGCTTGGCTTGACAATGTCATGGCTAGTGTTCCTGAGCTGGCCATATGTTATCATCAAGATGGTGTTGTTCAGGGTTATGAGCTACTTAAAACAGATGAT ATATTTCTGTTAAAAGGCATCTCTGAAGATGGCACTCCTGCTTTCCATCCTCATGTCGTCCAACAAAATGGCCTTTCTGTTTTGAGGTTCCTTGAAGAAA ACTGCAAGCAAGATCCTGGTGCTTACTGGCTTTATAAAAGTGCTGGAGAAGACATGATTCAACTTTTTGATCTTTGTGTTATTCCCAAAACTCATTCCTC CAACGATTGTGATGATGGCACAAGCTCCCTGCCTTCTTTAATGCATAGAGGGAGAAGCGATTCCTTATTTTCTTTAGGAACTCTCCTTTATCGTATAGCT CACAGGCTTTCCCTTTCAATGGCTCCTAATAATAGGGCCAAGTGTGCCAGATTCTTCCAACAATGTTTGGAATTTCTAGATGATCCGGACCATCTGGTAG TGCGCGCATCTGCTCATGAACAATTTGCAAGGCTCCTTTTGAATCATGATGAGGAGCTGGAATTGACGTTTGAATCACTCCCAGGAGAATGTGAAGTTAC AGTTCCAGTTGACTCCTCAGACCCCTTGAGTAGATTCTCTGAATCAGTTGCTTATGAAAATGTCTCTTCAGTTGCAGAAGACAGATGGAGTGAGGAGGGA AAAGCTTTTCAGGAAGTAATATCAGAAGCCTCGGTAAAAATGACTTTGGAGTCAAATATTTCGACTCCAGGAAATTTGATAGCATTGGATGATACTGAAT CAAAAGATTCAGGAGTTTTGCCTAGTTCCAGTAGTGACGAAATGGTTGCTGTGTGCAAAGTTTCCCCAACACCTCCCCATGCGGTGCAAACTGTGGCTGA GCCAGTCTCTTCTAAGTTAGCTGCAGTACATCATGTTTCTCAAGCTATCAAGTCGCTCAGATGGATGCACCAGCTGCAAAGTTCTGATTCAGAGTTGCTT GATGAAGGCAGTTATTTTGATGGGCCACCTTCCTCAATGAACTTTTCTGTTTGTGCATGTGGTGATGCTGATTGTATCGAAGTTTGCGACATCCGACAGT GGCTACCAACATCAAAAGTGGATGAAAAATTGTGGAAACTAGTTCTTCTTCTTGGAGAATCTTATTTGGCACTAGGACAAGCTTATAAGGAGGATAAACA GCTGCATCAAGCTTTGAAGGTAGTAGAATTAGCATGTGCTGTATACGGATCAATGCCACAGTTCTTGGAAGACAGTAGGTTTATTTCCTCAATGGTTACT TATTCATCCTCAATAAAATGCAATGATGGAGATGAGAAGATGATATCGTGTGTTAGCAACAGAAAAGAAGTGAAATCCAGCTCCAATGACAGGTTTCTTG CTTATGAGCAGTTTTCTTCTACGTACCTCTTTTGGGCCAAGGCATGGACACTGGTTGGTGATGTTTATGTTGAGTTCCATTTCATGAAGGGTAAAGTGCT CTCAAATCAATCAGAGACAAAATCTTCTGCTAGAGAGTTGAGAATATCAACAGAGGTCGTGAAAGAAGTCCAGAGGCTGAAGAAGAAGCTGGGGCAGCAT AATCAGAACTGCAGTTCATGCTCCTTGGTGAATTGCAGCTGCCAGAGTGATAGGGCAAGTAGCGGTAGCAGTGCAAGCAGTAGCAGTGGAGATAAACACT CTGTAGCTTATGGTAGAAAGCACAGTAAAAGATCCCATGCTAAGGGTGCCACCTACTCACTCATGGGAGATTCTGATGATGGCCGGGCACATCACAAAGA GAAAAGTAGGAAGAATTCTGGAGAATATCCTCAGCTTGGCAGAGGTGATAATGATACTGCAATAGAAGCTTCTGGTATTGCAGTTGATAAGCATGAGATT AATTCCTTGGCAGATGCTAATTCTGATGTATTAGAGGGTGGTTTGGAAACACATGATGCAGGTTCCATTTTGCCTTCTCAAAGTGAAACTACTTCAAAAG AAAAACCTAAACCAATTAAAGGAGGGATATTTAAATATATTAGCAATCCTGCTGTCAGAGATGCAGAATTCAATCTTTCTGCTGCTTTAAGTTGTTACCA AGAAGCTAGAAAGGCATTGAGTGGACTTCCTACTGGCTCAGCAGAACTTCAATCTGTAATTAAAAAGATAGGGTGGGTTTGTAACGAAATGGGTCGGAAT AGGCTAGAAGGAAAAGAGTTGAACAAAGCTGAACTTGCATTTGCAGATGCCATAGATGCGTTCAGAGAAGTTTCTGACCATGCCAACATCATATTAATTA ATTGTAATTTGGGCCATGGTAGACGAGCATTGGCTGAAGAGATGGTGTCCAAGATGGAAAATCTCAAATCACATCCAATCTTCCAGAATGCATACAAGGA AGCTCTGCAAACTGCAAAACTAGAATACAGTGAATCCCTCAGATATTATGGGGCAGCAAGAGCAGAACTAAATGCTATTGTGGAAGAGGATGATTCGGTG CCAACTGTCTTGAGAAATGAAGTTCAGACTCAGTTTGCTCATACATATTTGAGGCTTGGCATGCTTTTGGCTAAAGAAGATGTTACCACAAGAGTTTATG AAAATGGAGCATTGGAAGATATGCCTGTTGTTACTATTAGTCCGAATGAAAAAAGAGACAGGAAAGAAGTGAGGAAGCATGAGATTTCAGCTAATGATGC CATTAGGGAGGCATTGACTGTGTATGAATCTCTGGGTCAATTACGGAAACAAGAAGCTGCATATGCGTACTCTCAACTTGCTAGCTACCAGAGGGATTGC TGTTTGAAATTCTTGAATTTGGATCTAAAGAATACCACTTTAAATAAAAATGGAAACAACAATCTTCAGCGGGTGAAGCAATATGCATGCCTGGCTGAGA GGAACTGGCAAAAAGCAATGGACTTCTACAGTCCTAAGACACATCCTGCCATGCATTTGACTATTCTTATTGAGAGATCAGCTCTTTCATTGAGCCTCTC GAGCACCTTACACTCAAATGTGATGCTAGAATCAGCTCTAGCTCGCATGCTTGAAGGACGTCACATATCAGATGCAATATCAGATTCTTTCGGGACTGAT TATCCTGAGATAAATTCCAAATTCTGGGGTCAACTACAGATGCTCTTAAAGAAAATGCTGTCCTTGGCCCTCTCTGCAAATGCAAATAAGCCCGTCGCTT TTGCACAGCCAATTCCATCATCGAGCAAGTGCGGAGATGCTGGAAAACTCAGGGAGCTCTACAAAATGTCCTTGAAGTCTTCTAATTTAAGTCAATTACA TGCTATGCACACCCTATGGACATCGTAG
AA sequence Show only first row Show all	>Potri.019G083100.1 pacid=42773056 polypeptide=Potri.019G083100.1.p locus=Potri.019G083100 ID=Potri.019G083100.1.v4.1 annot-version=v4.1 MEMEKQSPSPSPPSLQSESSSLRELQRVGTLEIARPKPPVGFLCGSIPVPTDKSFHAFNSALVPSSRQTCSVSAPRYRMLPTETDLNTLPVVSNLPEKVL PISAAVQSKFKGEFPWDADAISSNLTRKCEALAVSGLVEYGDEIDVIASADILKQIFKIPYSKARLSIAVRRIGQTLVLNKGPDAEEGERLVRRHKNQSK KCTDQSLFLNFAMHSVRMEACDCPPTHPASSTGQSNSSVLPGGDASQFVGQSDDVTRNEGFNHCSEYPHVKQDNFFWESKKNKRNKGHHPVKKSSHLGEK PRSSMQETEKHKRVSNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVTRQVTPLTWLEAWLDNVMASVPELAICYHQDGVVQGYELLKTDD IFLLKGISEDGTPAFHPHVVQQNGLSVLRFLEENCKQDPGAYWLYKSAGEDMIQLFDLCVIPKTHSSNDCDDGTSSLPSLMHRGRSDSLFSLGTLLYRIA HRLSLSMAPNNRAKCARFFQQCLEFLDDPDHLVVRASAHEQFARLLLNHDEELELTFESLPGECEVTVPVDSSDPLSRFSESVAYENVSSVAEDRWSEEG KAFQEVISEASVKMTLESNISTPGNLIALDDTESKDSGVLPSSSSDEMVAVCKVSPTPPHAVQTVAEPVSSKLAAVHHVSQAIKSLRWMHQLQSSDSELL DEGSYFDGPPSSMNFSVCACGDADCIEVCDIRQWLPTSKVDEKLWKLVLLLGESYLALGQAYKEDKQLHQALKVVELACAVYGSMPQFLEDSRFISSMVT YSSSIKCNDGDEKMISCVSNRKEVKSSSNDRFLAYEQFSSTYLFWAKAWTLVGDVYVEFHFMKGKVLSNQSETKSSARELRISTEVVKEVQRLKKKLGQH NQNCSSCSLVNCSCQSDRASSGSSASSSSGDKHSVAYGRKHSKRSHAKGATYSLMGDSDDGRAHHKEKSRKNSGEYPQLGRGDNDTAIEASGIAVDKHEI NSLADANSDVLEGGLETHDAGSILPSQSETTSKEKPKPIKGGIFKYISNPAVRDAEFNLSAALSCYQEARKALSGLPTGSAELQSVIKKIGWVCNEMGRN RLEGKELNKAELAFADAIDAFREVSDHANIILINCNLGHGRRALAEEMVSKMENLKSHPIFQNAYKEALQTAKLEYSESLRYYGAARAELNAIVEEDDSV PTVLRNEVQTQFAHTYLRLGMLLAKEDVTTRVYENGALEDMPVVTISPNEKRDRKEVRKHEISANDAIREALTVYESLGQLRKQEAAYAYSQLASYQRDC CLKFLNLDLKNTTLNKNGNNNLQRVKQYACLAERNWQKAMDFYSPKTHPAMHLTILIERSALSLSLSSTLHSNVMLESALARMLEGRHISDAISDSFGTD YPEINSKFWGQLQMLLKKMLSLALSANANKPVAFAQPIPSSSKCGDAGKLRELYKMSLKSSNLSQLHAMHTLWTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35660			unknown protein		Potri.019G083100 [exp]	0	1
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.013G092000 [exp]	1.00	0.9348
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.001G473100 [exp]	1.41	0.9187	PEX5.2
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075900 [exp]	3.46	0.9113
					Potri.002G154150 [exp]	4.00	0.9107
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	4.00	0.8790
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	5.19	0.8929
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.002G117200 [exp]	5.83	0.8785
AT2G25760			Protein kinase family protein ...		Potri.018G046400 [exp]	6.92	0.8908
AT3G19610			Plant protein of unknown funct...		Potri.001G294600 [exp]	7.14	0.8381
AT1G17780			unknown protein		Potri.001G376800 [exp]	7.34	0.8759

Compare expression of checked genes

Potri.019G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.