Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09570 835 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT1G35670 833 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT5G23580 720 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT4G35310 714 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 707 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT5G04870 699 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT3G10660 696 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT4G38230 686 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT2G38910 671 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT5G19360 615 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G112500 [exp] 946 / 0 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.T012800 [exp] 808 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.004G207300 [exp] 724 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 723 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.008G014700 [exp] 718 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 717 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G066700 [exp] 701 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G200600 [exp] 691 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G199400 [exp] 690 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009427 [exp] 828 / 0 AT4G09570 792 / 0.0 calcium-dependent protein kinase 4 (.1) Lus10017911 [exp] 802 / 0 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10014820 [exp] 797 / 0 AT1G35670 777 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10039623 [exp] 761 / 0 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10029547 [exp] 756 / 0 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10022986 [exp] 729 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10001384 [exp] 725 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10026559 [exp] 720 / 0 AT2G17290 952 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Lus10013842 [exp] 720 / 0 AT2G17290 948 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Lus10021248 [exp] 712 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.019G083200.1 pacid=42774524 polypeptide=Potri.019G083200.1.p locus=Potri.019G083200 ID=Potri.019G083200.1.v4.1 annot-version=v4.1 ATGAATGAAGAAACCAGCAGAGCACCACCACCACAACAACGACCATCTTCAGCAGCACCACCAGCATCAAGAGCACGACCAACAACAAGAAAGCCCGCAA CTTCAGTTTTGCCACATCAAACCCCAAGACTTAGAGACCATTATTTGTTTGGCAAGAAACTAGGACAAGGTCAATTTGGAATCACGTATCTATGTACCCA TAAAGCAAGCAGCGCTCTTTATGCCTGCAAATCAATTTCAAAGAGGAAACTTTTATGTAGAGAAGACTATGAGGATGTTTATAGAGAGATTCAGATCATG CACCATTTATCAGGGCAACCAAATGTGGTGCAAATAAAGGATACTTATGAAGATTCCATGTTTGTACATTTGGTTATGGAGTTATGTGCAGGTGGTGAGC TTTTTGATAGGATCGTGGCAAAGGGACATTATAGCGAGAAAGAGGCTGCTAAATTGACCAAAAACATAATTGGGGTGGTTGAGTATTGTCATTGTTTGGG GGTTATGCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGATAAACCTGGTGATGATGCCAAGCTCAAGACTACAGATTTTGGCCTTTCTGTCTTTTAC AAGCCAGGACAATATTTTTATGATGTAGTTGGGAGTCCGTATTATGTTGCACCAGAGGTTTTGCTTAAGCACTATGGTCCTCAAGCAGATGTCTGGAGTG CGGGTGTTATCCTTTACATCTTATTAAGTGGGGTTCCGCCTTTTTGGGCAGAAACCGATTCAGGAATCTTCAGACAGATTTTACAAGGAAAACTAGATTT AGAATCTGATCCGTGGCCAAATATCTCAGAAAGTGCCAAAGATTTGATCAGAAAGATGCTTGACAGGGACCCGAAGCAAAGGATTACTGCTCATGAAGTC TTGTGTAACCCATGGATTGTAGATGACAGAGTTGCTCCAGACAAACCTCTTGATTCTGCAGTATTGTCACGTCTGAAGCATTTCTCAGCGATGAATAAAC TTAAAAAGATGGCTTTGCGTGTCATAGCAGAAAGGCTTTCTGAAGAAGAAATTGGTGGTTTGAAAGAGTTGTTTAAAATGATTGACACAGACAATAGTGG GACAATAACATTCGAAGAACTTAAACACGGTTTGAAGAGAGTTGGTTCTCAGATGACAGAAACTGAAATCAAGGATTTGATGGATGCGGCTGATATAGAC AACAGTGGAACCATAGACTATGGTGAATTTCTTGCTGCTACTTTGCACTTAAATAAGATGGAGAGAGAGGACAATTTGGTCGCAGCTTTCTCCTATTTTG ACAAAGATGGTAGCGGCTACATCACGATTGATGAACTTCAACAGGCCTGCAAAGATTTTGGTCTTGGTGATGTACATCTGGATGAGACAATCAAAGAAAT TGATCAAGACAATGATGGGAGGATAGATTATGGGGAGTTTGCTGCAATGATGAGAAAGGGTGATGGAGGAGTTGGGAGGACCAGAACCATGAGAAGCAAC CTGAACTTTAATTTGGCTGATGCTTTGGGGGTTGAAAATGCAACCTCAGATGCTAAATGA
AA sequence Show only first row Show all	>Potri.019G083200.1 pacid=42774524 polypeptide=Potri.019G083200.1.p locus=Potri.019G083200 ID=Potri.019G083200.1.v4.1 annot-version=v4.1 MNEETSRAPPPQQRPSSAAPPASRARPTTRKPATSVLPHQTPRLRDHYLFGKKLGQGQFGITYLCTHKASSALYACKSISKRKLLCREDYEDVYREIQIM HHLSGQPNVVQIKDTYEDSMFVHLVMELCAGGELFDRIVAKGHYSEKEAAKLTKNIIGVVEYCHCLGVMHRDLKPENFLFDKPGDDAKLKTTDFGLSVFY KPGQYFYDVVGSPYYVAPEVLLKHYGPQADVWSAGVILYILLSGVPPFWAETDSGIFRQILQGKLDLESDPWPNISESAKDLIRKMLDRDPKQRITAHEV LCNPWIVDDRVAPDKPLDSAVLSRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKHGLKRVGSQMTETEIKDLMDAADID NSGTIDYGEFLAATLHLNKMEREDNLVAAFSYFDKDGSGYITIDELQQACKDFGLGDVHLDETIKEIDQDNDGRIDYGEFAAMMRKGDGGVGRTRTMRSN LNFNLADALGVENATSDAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Potri.019G083200 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.014G143900 [exp]	2.00	0.8562
					Potri.018G126300 [exp]	5.47	0.8236
AT4G15790			unknown protein		Potri.010G024600 [exp]	7.74	0.8436
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	8.00	0.8372
					Potri.017G139650 [exp]	8.83	0.7902
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	12.32	0.8208	Pt-ATBRCA1.1
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	13.41	0.8183	CLC.3
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	15.29	0.8190	CYCA3.1
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	15.65	0.8212
AT1G56050			GTP-binding protein-related (....		Potri.011G143700 [exp]	16.43	0.7822

Compare expression of checked genes

Potri.019G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.