Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL21.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35680 174 / 2e-54 RPL21C chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) AT4G30930 97 / 3e-24 WRKY32, NFD1 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G112900 [exp] 298 / 1e-103 AT1G35680 157 / 6e-48 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Potri.015G095700 [exp] 113 / 2e-30 AT4G30930 181 / 6e-56 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017912 [exp] 202 / 2e-65 AT1G35680 213 / 4e-70 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Lus10014819 [exp] 201 / 3e-65 AT1G35680 220 / 1e-72 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Lus10015441 [exp] 103 / 2e-26 AT4G30930 217 / 7e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) Lus10011178 [exp] 103 / 3e-26 AT4G30930 218 / 2e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00829 [poplar] [flax] Ribosomal_L21p Ribosomal prokaryotic L21 protein
Representative CDS sequence Show only first row Show all	>Potri.019G083400.1 pacid=42773275 polypeptide=Potri.019G083400.1.p locus=Potri.019G083400 ID=Potri.019G083400.1.v4.1 annot-version=v4.1 ATGGCTGCTTCTTCTTCTACAGCACTAATGGCTCTCTGTTCTTCGTTAACCACTCAATGCAAAATCTCCAAAAGCCAAAACCCTCCTCTCTCCAAAACCC TTTGTCTCTCTAAACCCAATTTTGGGTCTTTCTCAAACACCACTAAGAAGCTCTCCTCTCCTCTTATTTTCTCTAAAAGACCTACATTTTTTGCCAGGCC CAAAGTCTCTGAATCTGAAGCTCCTGTTGTTGAAGCAGAGACTGAAGTACCTGTGTCAGAGGCTAACCCTGAGCCTGCTGCCACGCAGATTGTTGAGGTT GCTAAGGAAGAGCCAACTAAGCGTGAGGAGATTTTTGCTGTTGTTATGGTAGGATCTCGCCAGTATATTGTTATACCAGGGCGATGGCTCTATGTTCAGA GGCTAAAAGGTGCAAATGTCAATGACAAGATAGTTTTGAATAAGGTGTTACTTGTGGGAACAAGAACAAGTGCCTATATTGGAAAACCAGTGGTGACTAA TGCTTCTGTTCATGCCGTAGTTGAAGAGCAGGGATTAGATGCTAAAAAGATTGTCTTCAAATATAAGAGGAAGAAGAACTATAGGAGAAATATTGGTCAT CGACAGCCAAATACTCGGATAAGGATAACAGGCATCACTGGCTATCAAGACTTCCCAGTATCTACTCTTGATTCATAA
AA sequence Show only first row Show all	>Potri.019G083400.1 pacid=42773275 polypeptide=Potri.019G083400.1.p locus=Potri.019G083400 ID=Potri.019G083400.1.v4.1 annot-version=v4.1 MAASSSTALMALCSSLTTQCKISKSQNPPLSKTLCLSKPNFGSFSNTTKKLSSPLIFSKRPTFFARPKVSESEAPVVEAETEVPVSEANPEPAATQIVEV AKEEPTKREEIFAVVMVGSRQYIVIPGRWLYVQRLKGANVNDKIVLNKVLLVGTRTSAYIGKPVVTNASVHAVVEEQGLDAKKIVFKYKRKKNYRRNIGH RQPNTRIRITGITGYQDFPVSTLDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.019G083400 [exp]	0	1	Pt-RPL21.3
AT3G15190			chloroplast 30S ribosomal prot...		Potri.001G396600 [exp]	1.41	0.9850
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Potri.013G161000 [exp]	1.73	0.9768
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Potri.016G113700 [exp]	3.16	0.9766	Pt-PSRP4.1
AT3G12345			unknown protein		Potri.008G047800 [exp]	4.69	0.9774
AT4G16410			unknown protein		Potri.006G017500 [exp]	5.65	0.9767
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.018G042100 [exp]	6.24	0.9663
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	6.63	0.9511	Pt-GSA1.1
AT1G51400			Photosystem II 5 kD protein (....		Potri.001G256900 [exp]	6.92	0.9691
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Potri.009G062500 [exp]	7.00	0.9727
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Potri.012G093800 [exp]	8.12	0.9562

Compare expression of checked genes

Potri.019G083400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.