Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71940 461 / 7e-166 SNARE associated Golgi protein family (.1.2) AT4G09580 459 / 3e-165 SNARE associated Golgi protein family (.1) AT4G17790 328 / 1e-113 SNARE associated Golgi protein family (.1) AT1G03260 53 / 5e-08 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G113000 [exp] 539 / 0 AT4G09580 454 / 5e-163 SNARE associated Golgi protein family (.1) Potri.003G094000 [exp] 337 / 1e-117 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1) Potri.001G140200 [exp] 331 / 5e-115 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 43 / 0.0002 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.010G030800 [exp] 42 / 0.0002 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.008G202600 [exp] 41 / 0.0004 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017913 [exp] 480 / 4e-173 AT4G09580 442 / 2e-158 SNARE associated Golgi protein family (.1) Lus10014818 [exp] 408 / 3e-145 AT1G71940 374 / 2e-132 SNARE associated Golgi protein family (.1.2) Lus10004564 [exp] 326 / 1e-112 AT4G17790 388 / 1e-137 SNARE associated Golgi protein family (.1) Lus10000905 [exp] 323 / 1e-111 AT4G17790 387 / 2e-137 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 50 / 9e-07 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 49 / 2e-06 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 48 / 3e-06 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 42 / 0.0004 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.019G083500.1 pacid=42774317 polypeptide=Potri.019G083500.1.p locus=Potri.019G083500 ID=Potri.019G083500.1.v4.1 annot-version=v4.1 ATGGCATCGACAAGGAATATAGTAGGTGGTGAAACAGCGACAGGAAACGAGAGGGGGAGGGTGTTAACGATGAGAGATGAAGAGAAAGCTAAAGAGGACG ATTCACCCTCTGCTAAAAGAGCTAAATTTGAGAGATTTCCGTTGACAAGATGGGAATTAGCTGCTGCTCTCGGAGTCTTTTTTGTCTTTTCTACGGGATT GTTTTGTATCTACTTGACAATGCCTGCTGCTGAATACGGCAAGCTCAAGTTGCCTCGTACTATTTCAGATCTTCGCTTGCTCAAAGACAATCTCGCAACA TATGCAAATGAATATCCAGCACAATTCATTCTGGGCTACTGCTCTACTTATATCTTCATGCAGACTTTTATGATTCCTGGAACAATTTTCATGTCATTGC TAGCTGGAGCTCTTTTTGGCGTTGTTAGGGGGATTTTTTTAGTTGTTTTCAATGCCACAGCTGGAGCGTCTTCCTGCTTTTTCTTGTCCAAGTTGATTGG CAGGCCTCTAGTTAATTGGTTGTGGCCTGAAAAGTTGAGATTTTTTCAGGCAGAGATTGCTAAGAGAAGGGATAAACTACTGAATTACATGCTCTTCTTG AGAGTAACTCCAACGTTGCCCAATCTTTTTATCAATTTGGCATCTCCAATCGTGGACATACCTTTTCATATTTTCTTTTTGGCTACTTTATTGGGTCTTA TTCCTGCTTCCTATATCACTGTCAGGGCCGGCCTTGCTCTTGGGGATCTCAAGTCAGTAAAGGATCTATACGATTACAAAACTTTGTCTGTGCTCTTCAT TATTGGGTCCATTTCCATATTCCCTACCCTTCTAAAGAGAAAGCGAATATATGAGTGA
AA sequence Show only first row Show all	>Potri.019G083500.1 pacid=42774317 polypeptide=Potri.019G083500.1.p locus=Potri.019G083500 ID=Potri.019G083500.1.v4.1 annot-version=v4.1 MASTRNIVGGETATGNERGRVLTMRDEEKAKEDDSPSAKRAKFERFPLTRWELAAALGVFFVFSTGLFCIYLTMPAAEYGKLKLPRTISDLRLLKDNLAT YANEYPAQFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVVRGIFLVVFNATAGASSCFFLSKLIGRPLVNWLWPEKLRFFQAEIAKRRDKLLNYMLFL RVTPTLPNLFINLASPIVDIPFHIFFLATLLGLIPASYITVRAGLALGDLKSVKDLYDYKTLSVLFIIGSISIFPTLLKRKRIYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71940			SNARE associated Golgi protein...		Potri.019G083500 [exp]	0	1
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.002G154400 [exp]	10.39	0.6842
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Potri.017G086500 [exp]	11.61	0.6426	CGS1.1
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Potri.018G069450 [exp]	21.79	0.6874
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.005G085100 [exp]	33.04	0.7183
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Potri.006G145200 [exp]	38.67	0.6622
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	39.15	0.6598
					Potri.009G086900 [exp]	42.07	0.6647
AT5G27840		TOPP8	Calcineurin-like metallo-phosp...		Potri.005G024100 [exp]	47.87	0.7095	Pt-TOPP8.1
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	65.84	0.6566
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.003G220300 [exp]	78.96	0.6828	TUA2

Compare expression of checked genes

Potri.019G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.