Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65280 479 / 2e-163 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G22080 60 / 5e-10 Chaperone DnaJ-domain superfamily protein (.1.2) AT5G49060 59 / 6e-09 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT3G57340 58 / 1e-08 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G05750 55 / 7e-08 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G61770 54 / 2e-07 Chaperone DnaJ-domain superfamily protein (.1) AT1G10350 51 / 1e-06 DNAJ heat shock family protein (.1) AT4G39150 50 / 2e-06 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT3G06778 49 / 2e-06 Chaperone DnaJ-domain superfamily protein (.1) AT4G36040 49 / 2e-06 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G215800 [exp] 67 / 4e-12 AT5G22080 324 / 5e-113 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.009G016700 [exp] 65 / 2e-11 AT5G22080 313 / 1e-108 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.004G022600 [exp] 60 / 2e-09 AT1G61770 406 / 9e-144 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G013200 [exp] 59 / 6e-09 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.010G148900 [exp] 57 / 2e-08 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G153700 [exp] 54 / 1e-07 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.016G120000 [exp] 54 / 2e-07 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G073900 [exp] 53 / 3e-07 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.009G015700 [exp] 52 / 5e-07 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017919 [exp] 524 / 0 AT1G65280 554 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014815 [exp] 494 / 4e-168 AT1G65280 522 / 4e-179 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013354 [exp] 65 / 2e-11 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10004099 [exp] 65 / 2e-11 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10037502 [exp] 60 / 2e-09 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10030079 [exp] 59 / 6e-09 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10006515 [exp] 57 / 1e-08 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10019421 [exp] 57 / 2e-08 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10006760 [exp] 56 / 2e-08 AT1G61770 409 / 5e-145 Chaperone DnaJ-domain superfamily protein (.1) Lus10043277 [exp] 57 / 3e-08 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G083700.1 pacid=42774489 polypeptide=Potri.019G083700.1.p locus=Potri.019G083700 ID=Potri.019G083700.1.v4.1 annot-version=v4.1 ATGGGACGCAGAACGAAGAGGAAGCACAGAGAAGACACCCCGACATCCCCATCAAGCTCCGACGACGACGGCGACGAAGACACCGACTCTTCCATTGAGA GGCGGCGAAGCCGCCACCGCAACCGGGGGAGAAGTGATGGGAGTTCGAGGAGAGATAAGGACAGGAAAAGAGAGAAAGAAGAGAAGAGAAGAAGAAAAGA CAGAGATAGAGAGAGGAAGAGAAGGAAATCGAAGAAGAGAAGAGATTATGAGTCCGAATCATCAGCATCCGGGTCTGGTTCGGAGGATAGGGAGATTGAT AGAGTTCGGGTTAACCCTGGAGATGTAGTTAAAGAGATGTTGAGTGAGTTCCCTAACGTTGGTGGTGACTTGAAACAGCTTCTGCAAATGATTGATGATG GGCAAGCTGTTGACATAAAAGGGATATCTGAAAGGTCATTGATTAAGCATTTGAAGAGACTTTTTATTTCATTAAATCTCAAGGAAAATGGGGATAGGGT TTTTTTGCTGCGTCCAAAAGCTGGTCCTACTTTGGAGGTTGTTGGACCCCTGATTCAAGCTTGTGCAGAGCCCAAAGAGCAACAGGTAGATCATTCTATT CCATCAGATGATGTGGATTCTATGCCACCAGATGCAGAACATAAACAAGAAACAGATGACAATAATGTGGCAGTGCCATCTTCTAGAGATGATGCTTCTG CTCCTAGAAGAAGGGTGATTGGCCCTGAAATGCCATCAGCCGAGTTACTTGCTGCAGCAGCAAAACTAACTGAAGCACAAGCTGAGCTTAGAGAAGCGGA GTTGGAGGAAGATACTGAGCTATTTATTGGACCTGCCCCCCCAGCTGTGGTTGCTGAAGCTGCATCAGCAAATGAAGCAGAGCGATTTGAAGAGGTCACA AGAATTATGGATGCTGTGGGTGACTCTCTATATGATGTTGTAGGAGTAAATCGAAACATGTCTGCTGATAACATAAAGAAAAGGTACTGGAAGCTGTCTC TTTTGGTGCATCCAGACAAGTGCTCTCATCCTCAAGCCCACCAAGCATTTGTCAAATTGAATAAAGCTTTCAAAGACTTGCAAGATCCTGAAAAGAGGAA ACTGCTGGATGATGAAATTAAACGCAAGGAAGAACAGGAAGCATTCAAGGCTGAGTTGCGAGCCATGCGTGAAGCTGCACAATGGAGAAGATTGCAAGGT ATATCTATGGAGGGAGATGATGAACTCCTGGCAGAAACAGAAGTTAAAGTAGCCCCATCCAGGGATGAATGGATGACAACGCTGCCTCCTGAAAGGAAAC CTGGTGGTATGCCCACGCAATCTAGAAGTTTCAGCAAGAACTCTAAAGAAGGACGTGGTGATACTAGTGTTTGGACAGATAACCCTTTAGACAGAGCCCA GAAAGCAAAGATGAATTACCTGGAAGCATACAATGAGGCCGCAGCACTTGCTTCAAATGAAGAGGAAAAGCAACGGGGAAGTGCAGATGCAGATTTGGTG GATAAATACAATAAAGCAAAACGATCTAAATCTTTGGTACAGAAGCACCAAGAAGAGGCTTCAAGTCGTTCGAAGAAAAAATCCAAGCAGAAACAAGAGA AGGGAGAGTGGGTGGGGCAACACCCATGGAAGCCTTGGGATCGCGAGAAGGACCTGGAAGCTGGAAGGAAAAGTATAAAATTAGATTCAGACAACATGTC TCAGGGTTTGTCTTCCAGGTTTTCATCAGGAAACTTCCAGAGGAGCTTCCTTTAA
AA sequence Show only first row Show all	>Potri.019G083700.1 pacid=42774489 polypeptide=Potri.019G083700.1.p locus=Potri.019G083700 ID=Potri.019G083700.1.v4.1 annot-version=v4.1 MGRRTKRKHREDTPTSPSSSDDDGDEDTDSSIERRRSRHRNRGRSDGSSRRDKDRKREKEEKRRRKDRDRERKRRKSKKRRDYESESSASGSGSEDREID RVRVNPGDVVKEMLSEFPNVGGDLKQLLQMIDDGQAVDIKGISERSLIKHLKRLFISLNLKENGDRVFLLRPKAGPTLEVVGPLIQACAEPKEQQVDHSI PSDDVDSMPPDAEHKQETDDNNVAVPSSRDDASAPRRRVIGPEMPSAELLAAAAKLTEAQAELREAELEEDTELFIGPAPPAVVAEAASANEAERFEEVT RIMDAVGDSLYDVVGVNRNMSADNIKKRYWKLSLLVHPDKCSHPQAHQAFVKLNKAFKDLQDPEKRKLLDDEIKRKEEQEAFKAELRAMREAAQWRRLQG ISMEGDDELLAETEVKVAPSRDEWMTTLPPERKPGGMPTQSRSFSKNSKEGRGDTSVWTDNPLDRAQKAKMNYLEAYNEAAALASNEEEKQRGSADADLV DKYNKAKRSKSLVQKHQEEASSRSKKKSKQKQEKGEWVGQHPWKPWDREKDLEAGRKSIKLDSDNMSQGLSSRFSSGNFQRSFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65280			DNAJ heat shock N-terminal dom...		Potri.019G083700 [exp]	0	1
AT1G56290			CwfJ-like family protein (.1)		Potri.001G415900 [exp]	2.00	0.9263
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	2.00	0.9388
AT2G25670			unknown protein		Potri.018G034800 [exp]	3.46	0.8790
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Potri.003G097700 [exp]	4.35	0.8576
AT5G41020	MYB		myb family transcription facto...		Potri.003G168900 [exp]	4.58	0.9251
AT3G51650			unknown protein		Potri.006G107500 [exp]	5.65	0.9163
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.009G155500 [exp]	6.92	0.8600
AT5G17900			microfibrillar-associated prot...		Potri.019G039900 [exp]	7.07	0.8531
AT1G49520			SWIB complex BAF60b domain-con...		Potri.004G145200 [exp]	9.21	0.9038
AT5G38720			unknown protein		Potri.017G108700 [exp]	10.77	0.8524

Compare expression of checked genes

Potri.019G083700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.