Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77855 47 / 5e-06 unknown protein AT1G22030 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G113800 [exp] 489 / 2e-176 ND / Potri.002G090300 [exp] 52 / 2e-07 AT1G22030 360 / 2e-124 unknown protein Potri.005G170700 [exp] 50 / 6e-07 AT1G22030 358 / 9e-124 unknown protein Potri.001G211900 [exp] 44 / 7e-05 AT1G22030 291 / 2e-97 unknown protein Potri.003G018700 [exp] 42 / 0.0004 AT1G22030 266 / 2e-87 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036385 [exp] 50 / 1e-06 AT2G46080 434 / 4e-153 unknown protein Lus10018821 [exp] 46 / 1e-05 AT2G46080 431 / 5e-152 unknown protein Lus10005122 [exp] 46 / 2e-05 AT2G46080 432 / 1e-152 unknown protein Lus10040334 [exp] 45 / 4e-05 AT2G18630 429 / 4e-150 Protein of unknown function (DUF677) (.1) Lus10023459 [exp] 45 / 5e-05 AT2G18630 419 / 9e-146 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.019G084400.1 pacid=42774649 polypeptide=Potri.019G084400.1.p locus=Potri.019G084400 ID=Potri.019G084400.1.v4.1 annot-version=v4.1 ATGAATACCTTTTCCTCTCTTCTTATAGATATCAAGAACCTTGAATCTTCACTAGCCAAAAACTCCTTGTCTCTTCAATGGTGTTTAGAAGCCACAAATC TCCTCAAGAAGATGCACTTTCAGTTTCTTGAAATATTTCAGAAGTCTGAGGTACCCCTGTTCTGGGATGGGGGAAACTATTTGGATGAGTACATGGAGGA GTCTTTGAACATCCTGGATTTTTGTAACGCGCTGAGATCAGCCATTTCTACCATGGATAGGTACCGTTTAATAGTTGATGTTGCAGTTAGAAGATTTTCT GATGAAGGGTATTTAGGTTCGGCCATGAATATGACTGAAATTGAGAAATTAGAAAGAGAATGGCAGAAGCTTTATGGCTTTGAGAACTGGAAAATTGTGA ATCTATACAAGACCGGCAGACCGAAAACAAAGACCAAGGATGATGAATTTTGTGCATCATATGCTGTAAGAAGAACGATGAATACTGTCTGTTCGCTCCT GTTTTCTGCAATATTCTATCCAGCTCCAATAGAAAAGGATGAGGAGGTTTATAGAGATTTCTCTCAACTGAAGCTATTCCCATCATCACTGAGGAAGCTT GTTTGTTGCTTTTCTGAGGAGCGAAGAGGTTTCAATGATAACTCAAGGCCAGTTTTAGTTGAGACTAAAATGGTAGGGAGTGCAGTTGAGGATTTTAAAG TTCAGATTCTGAAGGGTGTGGCTCTGAATAAAGAGAAGTTGGGAAAAAGCATTGATTCACTGCAGAAAAGTTCCCTGGCTTTGAAGGAAGGTCTAGAAAT GTTTGATTCTGTAGTTAATGAGCTGTTTCAAGAGGTGGTGAAAGGAAGGAATGAGATCCTAGCTATGGTTGCATCAAGCTAG
AA sequence Show only first row Show all	>Potri.019G084400.1 pacid=42774649 polypeptide=Potri.019G084400.1.p locus=Potri.019G084400 ID=Potri.019G084400.1.v4.1 annot-version=v4.1 MNTFSSLLIDIKNLESSLAKNSLSLQWCLEATNLLKKMHFQFLEIFQKSEVPLFWDGGNYLDEYMEESLNILDFCNALRSAISTMDRYRLIVDVAVRRFS DEGYLGSAMNMTEIEKLEREWQKLYGFENWKIVNLYKTGRPKTKTKDDEFCASYAVRRTMNTVCSLLFSAIFYPAPIEKDEEVYRDFSQLKLFPSSLRKL VCCFSEERRGFNDNSRPVLVETKMVGSAVEDFKVQILKGVALNKEKLGKSIDSLQKSSLALKEGLEMFDSVVNELFQEVVKGRNEILAMVASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77855			unknown protein		Potri.019G084400 [exp]	0	1
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.003G022800 [exp]	1.41	0.7346	NAC118
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	16.91	0.6936
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.009G062300 [exp]	24.28	0.5772
AT4G00770			unknown protein		Potri.002G152700 [exp]	36.37	0.6538
AT4G33070			Thiamine pyrophosphate depende...		Potri.004G054100 [exp]	39.68	0.6053	PDC1.3
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G105100 [exp]	42.28	0.6475
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.004G038100 [exp]	49.85	0.6237
					Potri.014G194201 [exp]	50.59	0.6336
AT5G03620			Subtilisin-like serine endopep...		Potri.006G114500 [exp]	60.29	0.6286
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	151.83	0.5616

Compare expression of checked genes

Potri.019G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.