Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71900 424 / 3e-149 Protein of unknown function (DUF803) (.1) AT1G34470 419 / 3e-147 Protein of unknown function (DUF803) (.1) AT4G09640 399 / 5e-139 Protein of unknown function (DUF803) (.1) AT3G23870 309 / 3e-104 Protein of unknown function (DUF803) (.1) AT2G21120 308 / 5e-104 Protein of unknown function (DUF803) (.1) AT4G13800 308 / 8e-104 Protein of unknown function (DUF803) (.1) AT4G38730 306 / 3e-103 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114100 [exp] 481 / 6e-172 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.003G009700 [exp] 419 / 3e-147 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.001G318700 [exp] 344 / 5e-118 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 330 / 4e-112 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 327 / 4e-111 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.001G305700 [exp] 305 / 1e-102 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 302 / 3e-101 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.004G168900 [exp] 275 / 8e-91 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015480 [exp] 376 / 2e-130 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 371 / 8e-129 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10019952 [exp] 345 / 2e-118 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10026280 [exp] 308 / 2e-103 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10012716 [exp] 307 / 2e-103 AT2G21120 444 / 1e-157 Protein of unknown function (DUF803) (.1) Lus10010893 [exp] 285 / 6e-95 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 271 / 5e-90 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1) Lus10022549 [exp] 260 / 4e-85 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10042393 [exp] 228 / 3e-73 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF05653 [poplar] [flax] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Potri.019G084600.2 pacid=42773617 polypeptide=Potri.019G084600.2.p locus=Potri.019G084600 ID=Potri.019G084600.2.v4.1 annot-version=v4.1 ATGGCGGAAACAGAGATAGGAATGTCAACAGATAACATAAAGGGATTGGTGTTGGCATTGTCTTCGAGTTTATTTATAGGAGCCAGTTTTATTGTTAAGA AAAAAGGGTTGAAGAAAGCTGGTGCTTCTGGTATTAGGGCAGGTGCTGGGGGTTATACTTACCTGTTTGAACCACTTTGGTGGATTGGCATGATAACAAT GATTGCTGGGGAAATTGCTAATTTTGCAGCCTATGCATTTGCACCAGCTATTCTAGTCACTCCTCTTGGTGCACTCAGTATCATTATCAGTGCTGCTCTT GCACATGCTATTTTACAGGAAAAGTTGCACACTTTTGGGATTCTTGGTTGTGCTCTTTGTGTTGTGGGTTCAACGACAATTGTTTTGCATGCACCTCAAG AACGTGAGATTGAGTCCGTGAAGGAAGTGTGGGACCTTGCAACAGAGCCAGCTTTTCTCTTGTATGCTGCTATTGTCATAACAGCTGCTGTTGTGATTAT CATCCGTGTTATACCCCATTATGGGCAGACTCATGTTATGGTCTATATTTCAATTTGTTCGCTCATGGGCTCACTATCGGTTATGAGTGTCAAAGCACTT GGAATCGCTTTGAAGCTGACTTTCTCGGGAATGAATCAGTTACTACACCCCCAAACATGGGCTTTTACCTTGATTGTACTTGCCTGTGTAATCACTCAAA TCAATTACTTAAACAAGGCTCTTGATACATTCAATGCAGCTGTTGTATCTCCCATATACTATGTGATGTTTACTTCATTAACAATTTTGGCTAGCGTAAT CATGTTTAAGGATTGGGATGGAAAGAACGCATCTCAAATTGTCACTGAAATATGTGGATTTGTGACGATCCTTTCTGGGACTTTTCTTCTTCATGAAACG AAGGACATGGTTGAAGGGTCATCACAATCTTCATCATTGCGCCTTCCTAAGCATGAAGAAGAAGATGAAGGACTTGACCCCGAAGGAATCCCTCTACGAC AAGTAGACACTCTGAGACCAAAATAG
AA sequence Show only first row Show all	>Potri.019G084600.2 pacid=42773617 polypeptide=Potri.019G084600.2.p locus=Potri.019G084600 ID=Potri.019G084600.2.v4.1 annot-version=v4.1 MAETEIGMSTDNIKGLVLALSSSLFIGASFIVKKKGLKKAGASGIRAGAGGYTYLFEPLWWIGMITMIAGEIANFAAYAFAPAILVTPLGALSIIISAAL AHAILQEKLHTFGILGCALCVVGSTTIVLHAPQEREIESVKEVWDLATEPAFLLYAAIVITAAVVIIIRVIPHYGQTHVMVYISICSLMGSLSVMSVKAL GIALKLTFSGMNQLLHPQTWAFTLIVLACVITQINYLNKALDTFNAAVVSPIYYVMFTSLTILASVIMFKDWDGKNASQIVTEICGFVTILSGTFLLHET KDMVEGSSQSSSLRLPKHEEEDEGLDPEGIPLRQVDTLRPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71900			Protein of unknown function (D...		Potri.019G084600 [exp]	0	1
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.002G154400 [exp]	13.67	0.7414
AT5G11490			adaptin family protein (.1.2)		Potri.006G243100 [exp]	20.49	0.8096
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Potri.005G073000 [exp]	24.00	0.7762	Pt-ATGB3.3
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Potri.001G031500 [exp]	33.82	0.8091	Pt-PNT1.1
AT3G56750			unknown protein		Potri.016G035600 [exp]	39.24	0.8121
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.011G103700 [exp]	60.00	0.7987
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.005G239900 [exp]	71.74	0.8055
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	79.77	0.7906
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	81.44	0.7351
AT5G42660			Protein of unknown function (D...		Potri.002G149900 [exp]	89.16	0.7609

Compare expression of checked genes

Potri.019G084600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.