Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34420 432 / 3e-140 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G48940 213 / 9e-59 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G44700 213 / 2e-58 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 212 / 2e-58 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 211 / 4e-58 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 209 / 2e-57 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G28440 209 / 2e-57 HSL1 HAESA-like 1 (.1) AT5G56040 209 / 2e-57 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G25790 205 / 3e-56 Leucine-rich receptor-like protein kinase family protein (.1) AT2G41820 204 / 4e-56 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G084800 [exp] 588 / 0 AT1G34420 753 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G114200 [exp] 554 / 0 AT1G34420 793 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G237400 [exp] 228 / 2e-64 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G007600 [exp] 228 / 7e-64 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.006G051700 [exp] 224 / 5e-63 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G058100 [exp] 224 / 7e-63 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 223 / 2e-62 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.003G157300 [exp] 216 / 7e-60 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G009300 [exp] 215 / 2e-59 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009429 [exp] 481 / 4e-159 AT1G34420 809 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10023323 [exp] 221 / 3e-61 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 219 / 7e-61 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011609 [exp] 216 / 1e-59 AT2G25790 857 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10013968 [exp] 214 / 5e-59 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10032954 [exp] 212 / 2e-58 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10018636 [exp] 210 / 1e-57 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10006045 [exp] 209 / 2e-57 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012193 [exp] 207 / 2e-57 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10008849 [exp] 209 / 3e-57 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G084700.1 pacid=42774453 polypeptide=Potri.019G084700.1.p locus=Potri.019G084700 ID=Potri.019G084700.1.v4.1 annot-version=v4.1 ATGAGCTGGCATGCACATAACACTCGCTTGCTGCTTTTATCTTGCTTCTTGCTTTCATGTTCCGTTGTGTTTTGTCAACTGTCCAAATACCAAGATATCA CCATGATCACTCTCTCTAAGCTCCTTAACAACACTACTTCACCATGGGATGCTACTAAGGAGCCAAACCCATGTTCGTGGATTGGAGTTAGATGCAGTCC TGACAACACACGGGTAACCCATCTTTTCCTATCTGGCATCGGTCTCTCCTCTTCTGATTTTATACCTGTTATTTGCAAGATCGAGTCTCTGCAGTGGCTT GATTTCTCGAACAACCTATTGAGCTCAATCCCAGATGAGTTCATCAATGTTTGTGGACAGATTTCGGAGTTGCAGACTTTGAGTTTTAGTCATAACTCTC TAGTTGGTCCTTTGCCTACTTTTCATGGTTTTGAAGGATTAGAAACCTTGGATTTGTCTTGTAACTCTATGAGTGGTAATATTAGTTTACAGTTAGATGG GTTTCGTTCACTCAAAAGCTTGAATCTTAGTTCCAATAAGTTTAATGGGCATGTTCCCATAAACCTTGGGAAATCCATGATGTTGGAAGAGCTTCAGCTT TCAGTGAATTCTTTCCAGGGTTCCATCCCGTCGGAAATAGTGAGTTATCAGAATTTGCACAGGATTGATCTTAGTGCAAATCAGCTTTCGGGGTCTATTC CTGATGTACTTGGAAACCTAACCTACTTGGAAGTTTTGGTTCTGTCTTCCAATAAGTTAGGTGGGGAGATCTCGACAAGCCTTTCAAATATTCAAACCCT GCAGCACTTTGCAGCAAATGAAAACAATTTCTATGGCGGAGTTCCTTGTGGACTTACAAGGTTTCTTACGTATTTAGATCTTAGTTATAACAGGTTAGCT GGGCTGATACCACCGGACTTTCTGTCACAGCCGAATGTGCACACTTTGGATTTGTCTTATAACATGTTGGAGGGTTCAATCCCAGCAAATGTATCTCGAG ACTTGGTTATTCTAAAATTGGGAAGCAATAGAATGAATGGCTCAATCCCTGTTTCATTTGAAGCACTAACAAATCTAACTCATTTGGAGCTGGAAAACAA TAGTTTGACTGGTGTGATACCTCCCCAATTGAGTTCTTGTGGAAGCTTAGTGGTGTTGAACTTGGCACAGAATAACCTAATTGGTGCATTACCAGCAGAA TTGGATGGTCTTTATTCACTTGAAGTCATGAAACTCCAATTAAACAAATTGAGTGGTGAGATCCCAAAGCAAATCCCCCCTGCGTTATCAACCCTGAATA TCAGCTGGAATTTGCTTACCGGTTCCATACCTTCTTCAATTGCAGGCTTGGACAACCTGGATTATTTGAACTTGCAAGGTAACAATCTCAGCGGTTCAAT CCCTGATAGTATGCCTTCTGTGGTTGAACTACAACTTGGACAAAATCAACTGAGTGGGAGGATTCCAAAGATGCCAGTGAGGTTGCAGACTGTCTTAAAT CTCAGCAGCAACCTCTTTGAAGGACCTATTCCAAGCGATCTTTCCCAGCTGATGGGTTTGAAAGTCTTGGACCTCTCGAACAACAAGTTCTCGGGTGAGA TTCCTATTCTTTTTACTCAAATGGCTACCTTGACAGAGCTGATACTTTCCAACAATCAGCTATCTGGAGTCATCCCAGTATTTCCACCACGGGTTTCGAT AAAAGTAACTGGAAATGTTGGCCTAGTTGACACTTCCGAGAAATTGGCAAGAAAGAAAGGAAGACAAATTGGTGTGACCATTATAGTTGGAGCGGGAGCC TCCTTCCTTATCTTTTTTCTTTTTTTCTTCTTGCTTTTGCTAGGTAAGCAAAAAAGAAACTGA
AA sequence Show only first row Show all	>Potri.019G084700.1 pacid=42774453 polypeptide=Potri.019G084700.1.p locus=Potri.019G084700 ID=Potri.019G084700.1.v4.1 annot-version=v4.1 MSWHAHNTRLLLLSCFLLSCSVVFCQLSKYQDITMITLSKLLNNTTSPWDATKEPNPCSWIGVRCSPDNTRVTHLFLSGIGLSSSDFIPVICKIESLQWL DFSNNLLSSIPDEFINVCGQISELQTLSFSHNSLVGPLPTFHGFEGLETLDLSCNSMSGNISLQLDGFRSLKSLNLSSNKFNGHVPINLGKSMMLEELQL SVNSFQGSIPSEIVSYQNLHRIDLSANQLSGSIPDVLGNLTYLEVLVLSSNKLGGEISTSLSNIQTLQHFAANENNFYGGVPCGLTRFLTYLDLSYNRLA GLIPPDFLSQPNVHTLDLSYNMLEGSIPANVSRDLVILKLGSNRMNGSIPVSFEALTNLTHLELENNSLTGVIPPQLSSCGSLVVLNLAQNNLIGALPAE LDGLYSLEVMKLQLNKLSGEIPKQIPPALSTLNISWNLLTGSIPSSIAGLDNLDYLNLQGNNLSGSIPDSMPSVVELQLGQNQLSGRIPKMPVRLQTVLN LSSNLFEGPIPSDLSQLMGLKVLDLSNNKFSGEIPILFTQMATLTELILSNNQLSGVIPVFPPRVSIKVTGNVGLVDTSEKLARKKGRQIGVTIIVGAGA SFLIFFLFFFLLLLGKQKRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34420			leucine-rich repeat transmembr...		Potri.019G084700 [exp]	0	1
AT5G59910		HTB4	Histone superfamily protein (....		Potri.008G030400 [exp]	2.23	0.8848
AT4G29260			HAD superfamily, subfamily III...		Potri.006G152900 [exp]	2.82	0.8907
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.007G067500 [exp]	3.00	0.8935	Pt-UBQ7.1
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Potri.003G074900 [exp]	8.48	0.9102
					Potri.019G045600 [exp]	12.80	0.8947
AT1G77122			Uncharacterised protein family...		Potri.002G071700 [exp]	15.16	0.8701
AT3G15518			unknown protein		Potri.011G123600 [exp]	20.37	0.8205
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.008G164900 [exp]	26.98	0.8504
					Potri.001G035450 [exp]	28.77	0.8672
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Potri.011G138200 [exp]	28.98	0.8489

Compare expression of checked genes

Potri.019G084700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.