Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34420 753 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G41820 402 / 1e-125 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 357 / 8e-107 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 350 / 2e-104 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G63930 346 / 6e-103 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 339 / 4e-100 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 336 / 4e-99 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 336 / 2e-98 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 329 / 5e-96 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G07280 328 / 9e-96 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114200 [exp] 1245 / 0 AT1G34420 793 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G084700 [exp] 516 / 8e-173 AT1G34420 432 / 2e-140 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G051700 [exp] 431 / 1e-136 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G055400 [exp] 430 / 3e-136 AT2G41820 1311 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 347 / 3e-103 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 330 / 8e-97 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 326 / 2e-95 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 318 / 2e-93 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 315 / 7e-92 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009429 [exp] 854 / 0 AT1G34420 809 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10006067 [exp] 431 / 4e-141 AT1G34420 371 / 1e-118 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10012193 [exp] 404 / 2e-126 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007543 [exp] 392 / 3e-123 AT2G41820 1130 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011756 [exp] 332 / 1e-97 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 327 / 6e-96 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028612 [exp] 325 / 2e-95 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011761 [exp] 317 / 1e-93 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017782 [exp] 311 / 1e-90 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10008849 [exp] 308 / 7e-89 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G084800.1 pacid=42774341 polypeptide=Potri.019G084800.1.p locus=Potri.019G084800 ID=Potri.019G084800.1.v4.1 annot-version=v4.1 ATGACAAGGTATGTGCAGCAAAGAACCTCTCTTTTCTTGTCTTTCTTGTTCTTGTTGTTTCCATCAGTGTTCTCTCAACTATCTTCAAACCAGACCAACA CCATGATGAATCTGTCTAAGTTACTTAACCTTTCTGATTCGTTATGGGATGCTACTAAAGACCCATGTTCTTGGAAGGGAGTTAATTGCAGCTCTGGCAA CTCGTCAGTAACTAGTCTTTCTCTATCTGTGTTTGGTCTCTCCAACTCTAATTTCTTGCCTGTTGTTTGCAAGATTGAAACTTTACAAGCCCTTGATCTT TCTAACAACCGTTTGAGCTCAATTTCAGATGAGTTCATCAATGATTGTGGAAGGATTGATGGGCTAAAGTTGTTGAATTTTAGCAAAAATTTGCTAAGTG GTTCTTTGCCTGCTTTTAATGTTTTTGTTGGGTTAGAATCTTTGGACTTGTCTTTCAATTCTCTGTCTGGCAATGTTAGTCTACAGGTAGATGGATTCCT TGCACTTAAAAGCTTGAATCTTAGTTCCAATAAGTTCACTGGTCCTATTCCTGTAAACCTTAGAAAGTCCTTGATGTTGGAGGAACTTCAGCTCTCTATG AATAGCTTCCAAGGTACGGTCCCTCAAGAAATTGCAAATTATCAGAACTTGAGCTTAATTGATCTCAGTGCCAATAATCTTGAGGGGCCGGTTCCTACTA GTATTGGAAATCTCGCCAAGTTGAGGATTTTACTTCTGTCTGGCAATAAATTGAGTGGGGAAATCCCAGCAAACATTTCAAATATCACAACCTTGTATCG ATTTGCAGCGAATCAGAACAAGTTTGGTGGTACAATTCCCAGTGGAATTACAAGATATCTTAGCTTCTTAGATCTCAGTTACAATAGCTTAAGAGGGCCT ATACCGACAGATCTTTTATCAGGGTCGAACTTGCAACTTGTGGATTTGTCTTATAATCTGTTGGAAGGCTCATTACCTGCAAAGGTATCTAAGAGCTTGA TCAGGTTGAGATTGGGAAGCAACAGGCTCAATGGGCCAATCCCTCCTTCTTTCGGGACACTTGATAAGTTGACTTACTTGGAACTGGATAACAATAGCTT GACCAATGAGATACCCCATCAGTTGAGTTCTTGCCGTAGTTTGGCACTATTGAATTTGGCACAGAATGACCTTACAGGCCCTGTACCTGCACCGTTGGGT AATCTCAGTAATCTTCAAGTTTTAAAACTTCAGCTCAACAATTTGAGTGGAGATATCCCTTTAGAGATCACTCAATTACAGTTGTTGTCGACCTTGAACA TCAGCTGGAATTCGCTCACTGGTTCAATACCTTCTTCAATTTCAAACTTGCAAAGACTTGCTCACCTGAACTTGCAAGGCAACAATCTTCGGGGTCCAAT ACCTGCCACTATCAACAGCATGAACTCTCTGTTAGAAGTCCAACTTGGACAAAATCAACTAAGTGGAACTATCCCAATGATGCCGGTGAAATTGCAGATC GCTTTGAATCTCAGCACCAACCTCTTTCAAGGAGCTATTCCAGAAACTCTTTCCCGACTGACGGGCCTAGAAATTTTGGATCTATCAAACAACAATCTCT CAGGTGAGATTCCAGAGTCTCTTACTGAAATGGAATCCCTAAATCAGTTGATACTCTCAAACAATCAGCTTTCTGGGGTCATCCCAGATTTCAAACATTA TGTGTCTTTAAATGCAAGTGGAAATTCAAGACTTAAAAATAATACAGCAACAAACACTCCCCAAGAATCCCCAAAGAAGAGGAGATCGGTTGTTGTGCCG GTTGTTGTTGCAGTTGTTGCTGCTTTTCTTGCTGTTGGCATTGTCTCGATTATAGTTCTATCATTCTCCAGGCGCTTTCTCAAGGTTAATGATCAGCAGT CACAATCAGGGGAAAATCTTCCATCACCTCAAGTCATCCAAGGCAATCTGTTGACTACAAATGGAATTCACAGGTCCAGCATCGATTTCACCAATGCCAT GGAAGTAGCTGCTGATCCATTGAACATTGAGTTGAAGACTAGGTTTTCAACATACTATAAAGCCACCATGCCTTCTGGAGCAAACTACTTTGTCAAGAAG CTCAACTGGAGCGACAAGATATTCCAATTGGGTAGCCACAATAAATTCGGACAAGAGCTGGAAGTTTTAGGGAAACTGAGCAATTCTAATGTCATGACTC CTTTGGCCTATGTATTGACCGTCGACAGTGCTTATCTCTTCTACGAATATGCTGAGAAGGGTACGCTTTTTGATGTTCTTCATGGTAAACTGGTAGATAC ATTAGACTGGGCAAGCCGTTACAGTATAGCAGTTGGAGTTGCTCAAGGCCTTACCTTTCTTCATGGATGCTCCTCTGGTCCGATTCTCCTCCTTGACCTT TCAAGCAGAAACATTTTGCTCAAGTCTCTGAAGGAGCCACTAGTTGGAGACATTGAGCTCCACAAAGTGATTGATCCAACAAAGAGCACGGGCAGCCTTT CTACAGTTGCTGGCTCTGTGGGCTATATTCCACCAGAGTATGCATACACAATGAGGGTGACAATGGCTGGGAATGTATATAGCTTTGGGGTCGTTCTACT GGAATTGCTGACAGGAAAGCCAGCAGTTAGTGAGGGAACTGAATTAGCCAAGTGGGTTTTAAGGAACTCAACACAGCAAGACAGGTGGGATGGCATCCTT GATTTTAACATCAGCAGGACTTCACCTGCTGTCAGAAGCCACATGCATGCGGTCCTTAAGATTGCCCTTAGTTGTGTTAGTGTTTCCACAGAAGCAAGGC CAAAGATGAAGAGCGTATTAAGAATGATCCTCAATGCACGATGA
AA sequence Show only first row Show all	>Potri.019G084800.1 pacid=42774341 polypeptide=Potri.019G084800.1.p locus=Potri.019G084800 ID=Potri.019G084800.1.v4.1 annot-version=v4.1 MTRYVQQRTSLFLSFLFLLFPSVFSQLSSNQTNTMMNLSKLLNLSDSLWDATKDPCSWKGVNCSSGNSSVTSLSLSVFGLSNSNFLPVVCKIETLQALDL SNNRLSSISDEFINDCGRIDGLKLLNFSKNLLSGSLPAFNVFVGLESLDLSFNSLSGNVSLQVDGFLALKSLNLSSNKFTGPIPVNLRKSLMLEELQLSM NSFQGTVPQEIANYQNLSLIDLSANNLEGPVPTSIGNLAKLRILLLSGNKLSGEIPANISNITTLYRFAANQNKFGGTIPSGITRYLSFLDLSYNSLRGP IPTDLLSGSNLQLVDLSYNLLEGSLPAKVSKSLIRLRLGSNRLNGPIPPSFGTLDKLTYLELDNNSLTNEIPHQLSSCRSLALLNLAQNDLTGPVPAPLG NLSNLQVLKLQLNNLSGDIPLEITQLQLLSTLNISWNSLTGSIPSSISNLQRLAHLNLQGNNLRGPIPATINSMNSLLEVQLGQNQLSGTIPMMPVKLQI ALNLSTNLFQGAIPETLSRLTGLEILDLSNNNLSGEIPESLTEMESLNQLILSNNQLSGVIPDFKHYVSLNASGNSRLKNNTATNTPQESPKKRRSVVVP VVVAVVAAFLAVGIVSIIVLSFSRRFLKVNDQQSQSGENLPSPQVIQGNLLTTNGIHRSSIDFTNAMEVAADPLNIELKTRFSTYYKATMPSGANYFVKK LNWSDKIFQLGSHNKFGQELEVLGKLSNSNVMTPLAYVLTVDSAYLFYEYAEKGTLFDVLHGKLVDTLDWASRYSIAVGVAQGLTFLHGCSSGPILLLDL SSRNILLKSLKEPLVGDIELHKVIDPTKSTGSLSTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVVLLELLTGKPAVSEGTELAKWVLRNSTQQDRWDGIL DFNISRTSPAVRSHMHAVLKIALSCVSVSTEARPKMKSVLRMILNAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34420			leucine-rich repeat transmembr...		Potri.019G084800 [exp]	0	1
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	4.12	0.9777
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	5.65	0.9735
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	7.74	0.9721
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	9.79	0.9732
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G148000 [exp]	11.48	0.9670
AT3G02645			Plant protein of unknown funct...		Potri.001G337900 [exp]	12.24	0.9720
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G124400 [exp]	12.24	0.9718
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.013G040300 [exp]	15.29	0.9689
AT5G51160			Ankyrin repeat family protein ...		Potri.006G223800 [exp]	15.87	0.9537
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	16.73	0.9700	Pt-AO1.3

Compare expression of checked genes

Potri.019G084800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.