Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61330 408 / 1e-140 rRNA processing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020496 [exp] 388 / 3e-133 AT5G61330 366 / 2e-124 rRNA processing protein-related (.1) Lus10012469 [exp] 382 / 1e-130 AT5G61330 373 / 5e-127 rRNA processing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13339 [poplar] [flax] AATF-Che1 Apoptosis antagonizing transcription factor
Representative CDS sequence Show only first row Show all	>Potri.019G085100.1 pacid=42773895 polypeptide=Potri.019G085100.1.p locus=Potri.019G085100 ID=Potri.019G085100.1.v4.1 annot-version=v4.1 ATGGGGTTATCCAAGAAGCTGTCAAGGAAATCAAGCAGAGATAGTGACGATTTTGAAGAGTTTGATGACATGGAAAGCGAGCAGCTTCTTACTACCATGG AAGATTATGATGATGATAGGGAAGACGACGAAGATGAAGAGGATGAGGAGGAGGAGGACGGAGAAGAAGAAGAGGAAGATGAGGACGAGGAGGATGGAGA AGAAGGAGAGAAGCAAGAAGAAGAAGACGAAGAGAGTGGAAAAGATGGCGAGATGGAAGACCTTGAGAAAGAATATATGAATCTTCGCAATCAAGAGCAA GATATATGGAAGAATCTTAAACGCCACAAGGATGAAGATCTCATTAAAGGTCAAGCAGTGAAGAACCAGAAGGCTCTCTGGGACAAAACTCTTGAGTTCA GATTCTTACTTCAAAAAGCATTTGCAAACTCAAACAGATTACCGCAGGAACCGGTTAGGTCTTCATTTTGTGATTCTGATGAAGTAGTTGGGATGGCATA TGCTGATGTGATTACCTCATCCAAGAAGACTTTGGAATCTCTACTGGAACTACAGGAGGCTTTGCTCGAGAAGAATCCATCAATTTCTCAATCTTCTAAT GGTGATTCTGGACAGGTCACTAAGAAGCATTCAAAAGATTCGACAAATTCGGATGCCGAAGAGGATATAGATTGGTTAAGAATTTCTGAGATGCAAAAGA GAATAGCTCCTTTCCGAAACAAATCAATAGATAAATGGCAGAGAAAGACACAGGTGACAACTGGTGCTGCTGCTATGACAGGAAAATTGCAGGCTTTTAA TCAGAATATCAGTGAACAAGTTGCTGCTTATATGAGGGATCCAACTAAAATGGTCAGGCAAATGCAACAAAGAAGATCAACCATTGGTGTTTTTGGAGCT GTTCCCGAGTTGACGAGCAATGCCAGGGGAGAGGAAACATGTCCCGATGGTGATCCTGAACTTCTAAATGACACTGAATTTTATCAGCAGTTATTGAAAG AATTTTTGGAGAATGTCGACCCCTCATCCACCGAGGCGACCTTTTATGCTCTAAAAAGGTTGCAAACTAAGAAGAGAAAGATTGTTGATCGGCGTGCTTC AAAGAGTCGAAAGATCAGGTACAACGTCCATGAAAAGATTGTCAATTTCATGGCTCCTCAGCCAATGAACATTCCTCCCATGGCCCCAAAAGTATTTGAG AATTTATTTGGATTGAAGACCCAAAAGCCTGCCGTAGATTCATAA
AA sequence Show only first row Show all	>Potri.019G085100.1 pacid=42773895 polypeptide=Potri.019G085100.1.p locus=Potri.019G085100 ID=Potri.019G085100.1.v4.1 annot-version=v4.1 MGLSKKLSRKSSRDSDDFEEFDDMESEQLLTTMEDYDDDREDDEDEEDEEEEDGEEEEEDEDEEDGEEGEKQEEEDEESGKDGEMEDLEKEYMNLRNQEQ DIWKNLKRHKDEDLIKGQAVKNQKALWDKTLEFRFLLQKAFANSNRLPQEPVRSSFCDSDEVVGMAYADVITSSKKTLESLLELQEALLEKNPSISQSSN GDSGQVTKKHSKDSTNSDAEEDIDWLRISEMQKRIAPFRNKSIDKWQRKTQVTTGAAAMTGKLQAFNQNISEQVAAYMRDPTKMVRQMQQRRSTIGVFGA VPELTSNARGEETCPDGDPELLNDTEFYQQLLKEFLENVDPSSTEATFYALKRLQTKKRKIVDRRASKSRKIRYNVHEKIVNFMAPQPMNIPPMAPKVFE NLFGLKTQKPAVDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61330			rRNA processing protein-relate...		Potri.019G085100 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Potri.009G054000 [exp]	1.00	0.8270
AT3G56990		EDA7	embryo sac development arrest ...		Potri.016G037400 [exp]	4.89	0.7492
AT3G16840			P-loop containing nucleoside t...		Potri.010G063600 [exp]	9.79	0.7260
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Potri.001G164100 [exp]	10.81	0.7489
AT1G63980			D111/G-patch domain-containing...		Potri.003G132600 [exp]	11.48	0.6475
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	14.49	0.6932
AT1G69070			unknown protein		Potri.010G140100 [exp]	19.44	0.6820
AT1G29320			Transducin/WD40 repeat-like su...		Potri.015G092400 [exp]	20.49	0.6738
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Potri.015G133400 [exp]	21.63	0.6690	PRH75.2
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.006G160400 [exp]	28.14	0.6739

Compare expression of checked genes

Potri.019G085100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.