Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22700 325 / 5e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G11540 59 / 2e-09 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G12400 43 / 0.0003 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114500 [exp] 498 / 5e-179 AT1G22700 321 / 7e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.016G075700 [exp] 58 / 4e-09 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 57 / 8e-09 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041265 [exp] 348 / 2e-119 AT1G22700 303 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10021972 [exp] 342 / 3e-119 AT1G22700 312 / 5e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10021336 [exp] 57 / 7e-09 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 57 / 8e-09 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035117 [exp] 43 / 0.0001 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 42 / 0.0005 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.019G085200.2 pacid=42774631 polypeptide=Potri.019G085200.2.p locus=Potri.019G085200 ID=Potri.019G085200.2.v4.1 annot-version=v4.1 ATGCTTCTCCAAGCAACCATCTCATCATCTCCACCTCTACAACACCCTCACCCTCACCCTCACTCTCTCCTCCCATTTGGGTCTCTCCAGTTCAGGACAC ACAGGCTCTCTCTTCAGGCCCTTTTTCAGCACTATAGTTCACCAGATTTGACAACTTTCAGAGTAGGCCATGGACTGAACGTCACAGAGTTTCCTGATTT CCAGATACATGGAAAGGAGTTGGCAATGGGATCCTATAGCTTAACAAGTACTGAGAAATCCTCGAGCAATCTTTGGAATATTGAGGATAATGTGTGCATG AAAAGAGTGATGGTTTGGGCATCTGTGCTCTCATTTGGACAAATCTCATTGTTAACTTCGGCTCAAGTGGCACATGCAAGAGAAAGTATCAAACCAGAAG CAATTTATGAGGTTGGGGAGTTATTTGAATTGGGAATCCAGCTCTCTTATCTGCTTTTACTACTAGCTTTGCTTGGGGTTGGAACTTTCTTTGTTATTCG TCAAGTCCTAACGCGTAGAGAGCTCGACCTTTCTGCTAAAGAATTGCAGGAGCAAGTAAGAAGTGGTGATGCCACTGCTACTGGGCTTTTTGAACTCGGT GCAGTAATGCTGAGGAGAAAATTTTACCCGGCTGCTACTAAATATTTACTTCAGGCAATTGAGAAATGGGATGGTGATGATCAAGATCTTGCCCAGGTTT ACAATGCCCTTGGCGTTAGCTATGTTCTTGACGGGAAGCTTGACAAGGGAAGCAAACAGTTTGAAGCTGCCGTGAAGCTTCAACCAGGTTATGTCACAGC CTGGAACAACCTCGGTGATGCCTATGAAAAGAAGAAAGACCTGAAGTCAGCTCTCAAGGCATTCGAAGAAGTTCTACTCTTTGATCCTAACAACAAGGTG GCAAGACCCAGAAGAGATGCCTTGAAGGATAAGGTACAAATGTACAGAGGAGTTCCCATCAAGTCTAAGGATAGATGA
AA sequence Show only first row Show all	>Potri.019G085200.2 pacid=42774631 polypeptide=Potri.019G085200.2.p locus=Potri.019G085200 ID=Potri.019G085200.2.v4.1 annot-version=v4.1 MLLQATISSSPPLQHPHPHPHSLLPFGSLQFRTHRLSLQALFQHYSSPDLTTFRVGHGLNVTEFPDFQIHGKELAMGSYSLTSTEKSSSNLWNIEDNVCM KRVMVWASVLSFGQISLLTSAQVAHARESIKPEAIYEVGELFELGIQLSYLLLLLALLGVGTFFVIRQVLTRRELDLSAKELQEQVRSGDATATGLFELG AVMLRRKFYPAATKYLLQAIEKWDGDDQDLAQVYNALGVSYVLDGKLDKGSKQFEAAVKLQPGYVTAWNNLGDAYEKKKDLKSALKAFEEVLLFDPNNKV ARPRRDALKDKVQMYRGVPIKSKDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.019G085200 [exp]	0	1
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.005G039300 [exp]	1.41	0.9352
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Potri.012G119800 [exp]	3.00	0.9229
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Potri.001G253700 [exp]	7.07	0.9014
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Potri.003G158000 [exp]	7.21	0.8647
AT4G01030			pentatricopeptide (PPR) repeat...		Potri.014G097000 [exp]	7.93	0.9127
AT3G16000		MFP1	MAR binding filament-like prot...		Potri.001G179600 [exp]	10.09	0.9152
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.006G160300 [exp]	11.61	0.9153
AT5G24490			30S ribosomal protein, putativ...		Potri.012G005800 [exp]	14.00	0.8934
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Potri.002G206300 [exp]	15.49	0.8986
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Potri.010G143000 [exp]	16.12	0.8401

Compare expression of checked genes

Potri.019G085200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.