Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34370 478 / 1e-165 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 236 / 6e-73 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G44160 110 / 7e-26 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT1G13290 107 / 7e-26 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT5G03150 110 / 1e-25 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G14580 108 / 2e-25 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT1G08290 107 / 2e-25 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT3G20880 108 / 3e-25 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT1G34790 105 / 3e-25 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G66730 108 / 5e-25 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G114600 [exp] 758 / 0 AT1G34370 495 / 3e-172 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.004G217100 [exp] 243 / 1e-75 AT5G22890 316 / 2e-105 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.007G094100 [exp] 239 / 1e-74 AT1G34370 236 / 3e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Potri.009G143700 [exp] 111 / 7e-27 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.004G183900 [exp] 110 / 9e-27 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.001G267900 [exp] 108 / 4e-26 AT3G57670 328 / 2e-111 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.010G129000 [exp] 107 / 6e-26 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Potri.002G098200 [exp] 105 / 4e-25 AT1G34790 311 / 3e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.005G027200 [exp] 107 / 2e-24 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009435 [exp] 440 / 4e-151 AT1G34370 506 / 4e-177 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10006071 [exp] 400 / 1e-135 AT1G34370 448 / 2e-154 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10023138 [exp] 236 / 2e-73 AT1G34370 236 / 4e-75 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10004887 [exp] 112 / 7e-27 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10011495 [exp] 105 / 8e-27 AT1G34370 97 / 6e-25 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) Lus10020597 [exp] 110 / 5e-26 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10033454 [exp] 106 / 3e-25 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004497 [exp] 107 / 8e-25 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10010820 [exp] 103 / 1e-24 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10019927 [exp] 105 / 3e-24 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G085400.1 pacid=42773592 polypeptide=Potri.019G085400.1.p locus=Potri.019G085400 ID=Potri.019G085400.1.v4.1 annot-version=v4.1 ATGGATCTTACAGATAGGCTATCTGTAGATGTATGGGCAGATACTTCATCCTCCGGTAATGAATTGCCGAGAAGGATGTCCTCGGAGAATCCATCCTTCA CCGATTTCAATTTACAGCAACAGCAGAAGCAGCAGCAAAAGTGGGAGGACAACATAATATCACCACCTTTCGGAGGATTCAACCAAGCATCGGAATCTGG ATATTTGCTTCTTTCCAACCGCAACAATCAAACCAAAATTCTGGATCATCAAGAAGATGGAAAAAGTATTGAGACACTTGAAACAAACAAAGTCCAAGAC TGGGATCCAAGAGCCATGCTTAGTAATCTCTCTTTTCTAGAGCAAAAGATCCATCATCTTCAAGATTTGGTGCATTTATTTGTTGGCCGCAAAGGTCAGG GTCTTGGGGGACAGGATCAACTCGTAACTCAGCAACAGCAGTTTCTCATAACTGCTGATCTCACTTCAATTATTGTTCAGCTGATCTCTACTGCAGGTAG CCTTCTCCCATCTGTGAAACATACACTTTCTACAGACACTCCTAATGGACATCTTGGGCAGCTTGGAGGACTTCTTTTTCCTCCTGTGGCGGGCATGAAT TGCAGTCCAAAGCCGCAACATGGTAGTGGAAGAAGAGTTTCTGATCAGTCCGACAAGATGGATGGTACTGGTAATTGTGGGACTGACCAGAACCACTTCA TTGAAGAACATGAAACGAAAGAGGAAGAAGATGCTGATGAAGGAGATTACCTTCCACCTGGTTCCTATGATATATTACAACTAGAAAAAGAGGAAATACT AGCACCACACACCCACTTCTGCACAATATGCGGGAAAGGGTTCAAGCGGGATGCAAATTTGAGGATGCATATGAGAGGCCATGGTGATGAGTACAAAACC CCTGCTGCACTTGCAAAACCCAACAAGGAATCCAGCTCAGATCCAGTGGTTATTAAGAGGTATTCCTGCCCTTTTTCTGGCTGCAAGCGTAACAAGGATC ACAAGAAGTTTCAGCCTTTGAAGTCTATTTTATGCGTCAAAAACCATTACAAGAGAACCCACTGTGACAAAAGCTACACCTGCAGCCGATGCAACACCAA GAAATTCTCAGTGACTGCAGATCTTAAAACTCATGAGAAGCATTGTGGCAAGGATAGATGGCTTTGTTCCTGTGGCACAACATTCTCGAGGAAAGACAAG CTTTTTGGACACATTGCTCTGTTCCAAGGCCATACTCCTGCTATTCCTCTCGAGGAAACTAAAGGACCAGCTGTGTCATCTGATAAAGTTGACGGGAACG AAGCATCAAATAAGGTCGGAAACATAAATTTCAGCTTTGGCTCTCATGCTGCTACCGGAAGTGGGGCTAAAAATGTTATGGAAGTGAACGACGATGCTGA TGATCCTTCCAGTTGTTTCTCACCGTTGAACTTCGATACATGTAATTTTGGTGGGTTCCATGAGTTTCCTCGACCTCCATTTGATGATTCAGAGAGTTCA TTCTCTTTTCTTCTTTCTTGA
AA sequence Show only first row Show all	>Potri.019G085400.1 pacid=42773592 polypeptide=Potri.019G085400.1.p locus=Potri.019G085400 ID=Potri.019G085400.1.v4.1 annot-version=v4.1 MDLTDRLSVDVWADTSSSGNELPRRMSSENPSFTDFNLQQQQKQQQKWEDNIISPPFGGFNQASESGYLLLSNRNNQTKILDHQEDGKSIETLETNKVQD WDPRAMLSNLSFLEQKIHHLQDLVHLFVGRKGQGLGGQDQLVTQQQQFLITADLTSIIVQLISTAGSLLPSVKHTLSTDTPNGHLGQLGGLLFPPVAGMN CSPKPQHGSGRRVSDQSDKMDGTGNCGTDQNHFIEEHETKEEEDADEGDYLPPGSYDILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKT PAALAKPNKESSSDPVVIKRYSCPFSGCKRNKDHKKFQPLKSILCVKNHYKRTHCDKSYTCSRCNTKKFSVTADLKTHEKHCGKDRWLCSCGTTFSRKDK LFGHIALFQGHTPAIPLEETKGPAVSSDKVDGNEASNKVGNINFSFGSHAATGSGAKNVMEVNDDADDPSSCFSPLNFDTCNFGGFHEFPRPPFDDSESS FSFLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.019G085400 [exp]	0	1
AT4G15080			DHHC-type zinc finger family p...		Potri.016G018400 [exp]	5.47	0.8280
AT1G04970			lipid-binding serum glycoprote...		Potri.001G358800 [exp]	5.91	0.8337
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G117200 [exp]	6.92	0.8264
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	10.48	0.8135
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G111300 [exp]	10.72	0.7974
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	11.00	0.8129
AT5G64880			unknown protein		Potri.005G083900 [exp]	11.53	0.8212
AT5G17760			P-loop containing nucleoside t...		Potri.005G119900 [exp]	14.83	0.8007
AT2G41790			Insulinase (Peptidase family M...		Potri.006G050700 [exp]	16.12	0.7930
					Potri.002G155700 [exp]	18.33	0.8217

Compare expression of checked genes

Potri.019G085400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.