Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SUC2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22710 645 / 0 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G71880 621 / 0 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G71890 613 / 0 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G66570 584 / 0 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT2G14670 578 / 0 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 569 / 0 ATSUC6 sucrose-proton symporter 6 (.1) AT5G06170 563 / 0 ATSUC9 sucrose-proton symporter 9 (.1) AT1G09960 431 / 2e-146 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 237 / 8e-71 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 820 / 0 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 447 / 9e-153 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 231 / 2e-68 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 228 / 2e-67 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017910 [exp] 641 / 0 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 639 / 0 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028616 [exp] 586 / 0 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 581 / 0 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 565 / 0 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 558 / 0 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 539 / 0 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10014821 [exp] 482 / 5e-168 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10032815 [exp] 451 / 1e-154 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10009428 [exp] 414 / 8e-142 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF13347 [poplar] [flax] MFS_2 MFS/sugar transport protein
Representative CDS sequence Show only first row Show all	>Potri.019G085800.1 pacid=42774539 polypeptide=Potri.019G085800.1.p locus=Potri.019G085800 ID=Potri.019G085800.1.v4.1 annot-version=v4.1 ATGGAGAGTGGAGTTAGAAAAGAAGACAAACCCCCTTCCTCCTCTGTCAATCTTCAACAACAACAACAACTGCCCTCCTCAGTAAAACCTGGCCCGTTAA AAAAGATCATAATGGTTGCATCAATAGCAGCTGGGGTTCAATTTGGTTGGGCACTACAGCTCTCTTTGTTAACCCCATATGTGCAACTTTTAGGCATTCC TCACACATGGGCAGCTTTCATTTGGCTCTGTGGGCCGATTTCTGGTATGTTAGTCCAGCCAGTAGTTGGCTACCACAGTGACCGCTGCACATCTCGTTTT GGCCGTCGCCGACCATTTATCGCGGCGGGGGCTGCTTTCGTCACCATTGCCGTGTTTCTCATTGGCTATGCCGCTGACATTGGCCACCTTTCTGGTGATT CCCTAACCAAAACAGCTAAACCACGAGCCATTGCTGTGTTTGTTGTAGGGTTTTGGATTCTTGATGTTGCTAATAACATGCTTCAAGGTCCATGTAGGGC ATTTCTTGCTGATCTTTCAGGGACGAATCAGAAGAAGACACGTACATCCAATGCTTTCTTCTCTTTCTTTATGGCTGTTGGCAATGTTCTTGGCTATGCA GCTGGGTCTTACACTCACTTATACAAACTTTTTCCATTTTCAAGAACCAAAGCTTGTGATGTCTACTGTGCAAACCTCAAATCTTGCTTCTTTATCTCTA TTGCCTTGCTTTTAACGTTAACAATTCTAGCTCTCTCTTACGTACGTGAAAAACCCTGGTCGCCGGAGGGAAGTCCCGGTGAAGGCGGTGACGAGGAGGA GGAAGAGGAGGCGATTGGAGAAGCCAAAGAGTCGGCGCCAATGCCCTTTTTTGGGGAAATATTTGCTGCTTTGAAGAACTTGCAAAGACCTATGTGGATC CTACTTTTGGTGACGTGTCTAAATTGGGTTGCTTGGTTCCCTTTCCTGTTGTTTGATACTGATTGGATGGGGAGAGAGGTTTACGGTGGTGATTCAAGTG GAAATGCTGATCAACTCAAGATGTATGATCGTGGGGTCCGTGCAGGTGCATTGGGGTTGATGCTTAACTCGGTGGTTTTGGGAGTTACTTCGCTTGGTGT GGAGGCTTTGGCTCGTGGGGTTGGTGGGGTTAAGAGGCTGTGGGGGATTGTGAATTTTGTCTTGGCTATTTGTTTGGCTATGACTATTTTGATAACCAAA TTGGCTCAGTCCAACAGAAGGTACACCACCGTGAATGGAGGAACCCACCTCTTGACGCCGCCGCCTGGTATCAAGGCTGGTGCTTTAGCCCTTTTTGCCG TTATGGGCATACCTCAAGCTATAACTTACAGCATCCCTTTTGCTCTGGCATCAATCTTTTCTAACACCTCTGGTGCTGGCCAAGGGCTTTCTCTGGGAGT TCTCAATCTGTCAATAGTTATACCACAGATGTTGGTGTCTGTAGCAAGTGGACCTTGGGATGCCCTTTTTGGAGGAGGTAATCCACCAGCTTTTGTAGTA GGAGCTGTTGCAGCCGCAGTTAGTGGAATATTGGCGTTCACCATGCTTCCATCTCCACCTCCTGACATCCCCTCAAACAAAATGGCTGTCACTGCTGCAT TCCATTGA
AA sequence Show only first row Show all	>Potri.019G085800.1 pacid=42774539 polypeptide=Potri.019G085800.1.p locus=Potri.019G085800 ID=Potri.019G085800.1.v4.1 annot-version=v4.1 MESGVRKEDKPPSSSVNLQQQQQLPSSVKPGPLKKIIMVASIAAGVQFGWALQLSLLTPYVQLLGIPHTWAAFIWLCGPISGMLVQPVVGYHSDRCTSRF GRRRPFIAAGAAFVTIAVFLIGYAADIGHLSGDSLTKTAKPRAIAVFVVGFWILDVANNMLQGPCRAFLADLSGTNQKKTRTSNAFFSFFMAVGNVLGYA AGSYTHLYKLFPFSRTKACDVYCANLKSCFFISIALLLTLTILALSYVREKPWSPEGSPGEGGDEEEEEEAIGEAKESAPMPFFGEIFAALKNLQRPMWI LLLVTCLNWVAWFPFLLFDTDWMGREVYGGDSSGNADQLKMYDRGVRAGALGLMLNSVVLGVTSLGVEALARGVGGVKRLWGIVNFVLAICLAMTILITK LAQSNRRYTTVNGGTHLLTPPPGIKAGALALFAVMGIPQAITYSIPFALASIFSNTSGAGQGLSLGVLNLSIVIPQMLVSVASGPWDALFGGGNPPAFVV GAVAAAVSGILAFTMLPSPPPDIPSNKMAVTAAFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Potri.019G085800 [exp]	0	1	SUC2.1
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.010G226250 [exp]	10.95	0.7363
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	12.16	0.7663
					Potri.013G041350 [exp]	14.42	0.7452
AT1G67910			unknown protein		Potri.008G186200 [exp]	15.29	0.7205
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G053800 [exp]	15.68	0.7345	Pt-IAA8.1
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Potri.003G131600 [exp]	16.09	0.7340
AT3G10360		APUM4	pumilio 4 (.1)		Potri.010G225600 [exp]	27.44	0.6112
AT4G27450			Aluminium induced protein with...		Potri.004G040600 [exp]	28.98	0.6672
AT2G41990			unknown protein		Potri.009G140600 [exp]	41.13	0.7126
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	45.47	0.6549	SAD1.1

Compare expression of checked genes

Potri.019G085800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.