Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34320 908 / 0 Protein of unknown function (DUF668) (.1) AT5G08660 630 / 0 Protein of unknown function (DUF668) (.1) AT1G30755 447 / 6e-150 Protein of unknown function (DUF668) (.1) AT5G51670 80 / 1e-15 Protein of unknown function (DUF668) (.1) AT3G23160 74 / 2e-13 Protein of unknown function (DUF668) (.1) AT5G04550 69 / 6e-12 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115300 [exp] 1137 / 0 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 620 / 0 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 577 / 0 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 531 / 0 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 528 / 0 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 118 / 5e-28 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 79 / 6e-15 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 77 / 2e-14 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 76 / 5e-14 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006049 [exp] 899 / 0 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 801 / 0 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 530 / 0 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 530 / 0 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 525 / 5e-180 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 444 / 4e-150 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 400 / 3e-133 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10013553 [exp] 77 / 4e-16 AT1G30755 79 / 1e-17 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 77 / 1e-14 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 77 / 3e-14 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05003 [poplar] [flax] DUF668 Protein of unknown function (DUF668) PF11961 [poplar] [flax] DUF3475 Domain of unknown function (DUF3475)
Representative CDS sequence Show only first row Show all	>Potri.019G085900.2 pacid=42774744 polypeptide=Potri.019G085900.2.p locus=Potri.019G085900 ID=Potri.019G085900.2.v4.1 annot-version=v4.1 ATGGGGGGGCTTTGCTCGAGGAGCTCGACTGTAGATAATGCTCCCAGTGGAGGCTTTCTGCAGTTGAATGGTCATTTTAGTCATGGGTCTGGTTTGGTTT TTCAGACTCGTGAATTGAAAATAGATAGCAATACAAATCCATCTCTAGTTGGGGAGAACAACGTGGATAATAAGCAGCTAAGAGAACCCTTTTCATTTCC GGAGGTGGATGTGGTTCAATATGGGATGAATCCAGATGACATCGATGATGGGATTCCTCGCTTGTCAAGGGCTCTGTCCAATAAATCCAGATCAACCAAG CCCACGCCAGTAGCTGTTGCAAAGGTCTCAGAAGTGAGCTCACTGTTGGGAAGAGCTGGTACTGTTGGGCTCGGAAAGGCATATGATGTATTGGACACAC TCGGTAGTAGCATGACCAATTTAAATCTTAGCAGTGGTGGTTTTACCTCTGGAGTGACAACAAAAGGGAATAAGATTTCAATTTTGGCTTTTGAAGTTGC AAACACAATTGTTAAGGGTGCCAATCTAATGCAATCTCTTTCAAAAGAGAACATTAGACATTTAAAAGAGGTTGTGCTTCCCTCAGAGGGGGTGCAAAAT TTAATATCAAGAGACATGGATGAACTCTTGAGGCTAGCAGCAACTGATAAGAGAGAAGAACTGAAAGTTTTTTCCGGAGAAGTGGTGCGTTTTGGAAATC GTTGTAAAGATCCTCAGTGGCACAACTTGGACCGATATCTTGAAAAGTTGGGTACTGAATTGACACCTGAAATGCAATTGAAGGACGAAGCTGAGACAGT TATGCATCAATTGATGAATTTGGTTCAGTATACAGCAGAACTGTATCATGAAATGCATGCCTTGGACAGATTTGAACAAGATTACCGCCGTAAGCTTCAG GAAGATGACAAAACAAATGTTGCTCAAAGAGGGGATAGTCTTTCAATTTTAAGGGCCGAGTTAAAGAGTCAAAGGAAGCATGTGAAAAGTTTGAAGAAGA AATCACTCTGGTCGAAGATTTTGGAAGAGGTGATGGAGAAATTGGTAGATATTGTCCATTTCTTGCATTTGGAGATTCATGAAGCCTTTGGTAGTGCTGA TGGCGATAGACCAGTAAAAAGTTCTTTGAACCATAAAAAGTTGGGGCCTGCTGGTCTTGCATTACATTATGCAAATATTATCACCCAAATTGATACTCTT GTGTCCCGATCAAGTTCTGTGCCTCCAAATACAAGGGATGCTTTGTACCAGGGATTGCCACCAAATATAAAATCTGCTTTGCGCTCAAAATTACTGTCAT TTCAAGTTAAGGAAGAGCTTACAGTTTCACAAATCAAAGCTGAAATGGAGAAAACTTTGCATTGGCTTGTTCCTATTGCTACTAACACAAACAAAGCTCA TCATGGATTTGGCTGGGTTGGAGAATGGGCGAATACAGGGTCTGAGGTGAATCGTAAACCTGCTGGACAGACTGACTTGCTCAGAATAGAGACACTACAC CATGCAGACAAGGAGAAGACTGAAATTTATATTCTTGAATTGGTGGTTTGGCTTCACCATCTTGTCAGCCAAGTAAGAGCTGCCAATGGCGGTCTCAGAT CTCCAGTTAAATCTCCGATTCGGTCGCCAAATCAGAAGACAATTCAGTTGTGTACACAAAGGCCAAGCTCTCCATCCCCAATGTTGACAATTGAAGACCA AGAGATGCTTCGGGATGTGAGTAAGAGGAAAAAGACGCCTGGGATAAGTAAGAGCCAGGAATTTGATACTGCAAAAAACAGGTTAAGCAAGCATCATCGA CTGAGTAAAAGTAGTAGCCACTCGCCGATGGGTGAAACTAGAAAAGATCCGTTTCCCATCAGAAGGCCATCGTCTGTTCCTGTCATTGACTTTGATATAG ACCGCATGAAGGCCTTGGATGTTATTGATCGAGTGGACACAATTCGAAGCTTGTAG
AA sequence Show only first row Show all	>Potri.019G085900.2 pacid=42774744 polypeptide=Potri.019G085900.2.p locus=Potri.019G085900 ID=Potri.019G085900.2.v4.1 annot-version=v4.1 MGGLCSRSSTVDNAPSGGFLQLNGHFSHGSGLVFQTRELKIDSNTNPSLVGENNVDNKQLREPFSFPEVDVVQYGMNPDDIDDGIPRLSRALSNKSRSTK PTPVAVAKVSEVSSLLGRAGTVGLGKAYDVLDTLGSSMTNLNLSSGGFTSGVTTKGNKISILAFEVANTIVKGANLMQSLSKENIRHLKEVVLPSEGVQN LISRDMDELLRLAATDKREELKVFSGEVVRFGNRCKDPQWHNLDRYLEKLGTELTPEMQLKDEAETVMHQLMNLVQYTAELYHEMHALDRFEQDYRRKLQ EDDKTNVAQRGDSLSILRAELKSQRKHVKSLKKKSLWSKILEEVMEKLVDIVHFLHLEIHEAFGSADGDRPVKSSLNHKKLGPAGLALHYANIITQIDTL VSRSSSVPPNTRDALYQGLPPNIKSALRSKLLSFQVKEELTVSQIKAEMEKTLHWLVPIATNTNKAHHGFGWVGEWANTGSEVNRKPAGQTDLLRIETLH HADKEKTEIYILELVVWLHHLVSQVRAANGGLRSPVKSPIRSPNQKTIQLCTQRPSSPSPMLTIEDQEMLRDVSKRKKTPGISKSQEFDTAKNRLSKHHR LSKSSSHSPMGETRKDPFPIRRPSSVPVIDFDIDRMKALDVIDRVDTIRSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34320			Protein of unknown function (D...		Potri.019G085900 [exp]	0	1
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Potri.018G039500 [exp]	3.16	0.8539
AT5G63550			DEK domain-containing chromati...		Potri.015G100700 [exp]	4.47	0.8090
AT1G19010			unknown protein		Potri.001G350000 [exp]	10.19	0.8128
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.004G208900 [exp]	10.67	0.8378
AT1G18560			BED zinc finger ;hAT family di...		Potri.012G059200 [exp]	10.95	0.8138
AT4G37130			hydroxyproline-rich glycoprote...		Potri.007G036600 [exp]	12.00	0.7887
AT4G22360			SWIB complex BAF60b domain-con...		Potri.006G010700 [exp]	12.40	0.7834
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018400 [exp]	14.49	0.7724
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.016G025300 [exp]	15.42	0.8137
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.001G215700 [exp]	16.97	0.7663

Compare expression of checked genes

Potri.019G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.