Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71870 652 / 0 MATE efflux family protein (.1) AT5G19700 420 / 9e-143 MATE efflux family protein (.1) AT4G29140 415 / 1e-140 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G49130 395 / 4e-133 MATE efflux family protein (.1) AT1G58340 387 / 2e-129 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT2G38510 377 / 2e-126 MATE efflux family protein (.1) AT5G52050 353 / 5e-117 MATE efflux family protein (.1) AT4G23030 352 / 3e-116 MATE efflux family protein (.1) AT5G52450 246 / 1e-75 MATE efflux family protein (.1) AT4G22790 241 / 2e-73 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115600 [exp] 883 / 0 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 434 / 5e-148 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 429 / 1e-146 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 412 / 4e-139 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 411 / 7e-139 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 403 / 1e-135 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.007G043100 [exp] 379 / 1e-126 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 362 / 1e-119 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.003G116700 [exp] 269 / 3e-84 AT4G22790 441 / 2e-151 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017836 [exp] 427 / 1e-145 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 411 / 1e-138 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10027417 [exp] 407 / 5e-137 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 395 / 4e-133 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 382 / 1e-127 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 344 / 1e-112 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 334 / 1e-108 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 311 / 1e-101 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10027277 [exp] 285 / 1e-92 AT1G71870 241 / 1e-75 MATE efflux family protein (.1) Lus10038987 [exp] 286 / 9e-91 AT1G71870 527 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.019G086100.1 pacid=42773297 polypeptide=Potri.019G086100.1.p locus=Potri.019G086100 ID=Potri.019G086100.1.v4.1 annot-version=v4.1 ATGGCAGAGAAAGACCCAGATTTCTATTCTCACAAACTTCCCTCTGCTTCTCAGGTTTTTGAAGAGCTAAAGGAGTTATGGGGCATGGCTTTGCCAATAA CAGCTGCGCACTTAATGGCCTTCTTTAGAGCAGTGGTCTCAGTTATGTTCTTGGGCAGGCTAGGCAGTCTAGAACTAGCTGGTGGTGCACTTTCCATTGG GTTTACAAACATAACTGGTTACTCTGTCCTCGTGGGCTTAGCTTCTGGACTAGAGCCAGTCTGTAGCCAAGCTTATGGCAGCAAGAATTGGGACCTCCTT TCTCTCTCTCTTCAACGTATGATCGTGATACTCGGCATTGCAATCATACCCATAAGTCTTTTGTGGCTTAATCTTGAATCAATCATGAATTTTATGGGCC AAGATCCTAATATTACTGCAATGGCAGCAACGTACTGTATGTACTCTCTCCCAGACCTCTTAACGAACACTTTATTACAGCCCTTGAGGGTTTTCTTAAG GTCACAGCGGGTGACAAAACCCATTATGTATTGCTCCTTATTGGCTGTTATTTTCCACGTGCCATTGAACTATGCTCTTGTTGTGGTGATGGGATGGGGG GTCCCAGGGGTGGCATTGGCATCAGTTGTGACTAACATGAACATGGTGATGCTGATGGTGGGGTATGTGTGGTGGGTTAGTGGACGATGGGAGATGAGAT GGAGGGTTGAGATTGGAGGGGTGTGTGGTGGGTTGGGACCGCTTTTGAAGGTGGCAGTCCCTAGCTGCTTAGGGATTTGCTTGGAGTGGTGGTGGTATGA GATAGTGACTGTCTTGGCAGGGTACTTGCCGAATCCCACACTGGCGGTGGCCGCCACTGGGATTCTCATCCAGACCACAAGCATGATGTATACCGTCCCC ATGGCACTTGCTGGCTGTGTCTCTGCTCGGGTAGGGAACGAGCTTGGAGCTGGTAAGCCATACAAAGCCAAGTTGGCAGCCATGGTTGCATTGGGTTGTG CCTTTGTGATCGGCGTTCTCAATGTGACATGGACAGTATTCCTTAGAGAGCGATGGGCTGGTCTGTTCACTAAGGATGTTCTTGTTAAAGGTCTTGTAGC AGCTGTTTTGCCAATAATAGGGCTCTGTGAGCTTGGTAACTGCCCTCAAACAACTGGCTGTGGCATCCTACGGGCCACAGCACGGCCCGCCGTCGGAGCT CGTATAAATTTAGGCTCATTCTACTTTGTGGGCACCCCAGTAGCAGTAGGCCTGGCCTTTGGGCTAAACATTGGGTTTTCTGGGCTGTGGTTCGGGCTCC TCTCTGCCCAGATAGCTTGTGCGTTGTCTATTCTCTATGTTGTCATGGTCCGTACAGATTGGGAACATGAGGCTTTCAAGGCGAAGGAGCTAACTAGCAT GGAAATGAGCGCATGCAATGGCGTTGGTCACAAAGAACATGAGCGAGACGAAGAGAGTAAAGGGTTGTTAATGAACGGTAATGGTGACATGGTAGATCAT GTTTGA
AA sequence Show only first row Show all	>Potri.019G086100.1 pacid=42773297 polypeptide=Potri.019G086100.1.p locus=Potri.019G086100 ID=Potri.019G086100.1.v4.1 annot-version=v4.1 MAEKDPDFYSHKLPSASQVFEELKELWGMALPITAAHLMAFFRAVVSVMFLGRLGSLELAGGALSIGFTNITGYSVLVGLASGLEPVCSQAYGSKNWDLL SLSLQRMIVILGIAIIPISLLWLNLESIMNFMGQDPNITAMAATYCMYSLPDLLTNTLLQPLRVFLRSQRVTKPIMYCSLLAVIFHVPLNYALVVVMGWG VPGVALASVVTNMNMVMLMVGYVWWVSGRWEMRWRVEIGGVCGGLGPLLKVAVPSCLGICLEWWWYEIVTVLAGYLPNPTLAVAATGILIQTTSMMYTVP MALAGCVSARVGNELGAGKPYKAKLAAMVALGCAFVIGVLNVTWTVFLRERWAGLFTKDVLVKGLVAAVLPIIGLCELGNCPQTTGCGILRATARPAVGA RINLGSFYFVGTPVAVGLAFGLNIGFSGLWFGLLSAQIACALSILYVVMVRTDWEHEAFKAKELTSMEMSACNGVGHKEHERDEESKGLLMNGNGDMVDH V

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71870			MATE efflux family protein (.1...		Potri.019G086100 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072100 [exp]	2.23	0.9570
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G182700 [exp]	6.16	0.9047
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.017G122950 [exp]	7.48	0.9270
AT4G31980			unknown protein		Potri.003G207900 [exp]	8.12	0.9246
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	9.21	0.9263
AT1G67720			Leucine-rich repeat protein ki...		Potri.010G052800 [exp]	9.79	0.9172
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.005G241500 [exp]	12.84	0.9216	CLV1.2
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.009G089500 [exp]	13.03	0.9164
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Potri.002G058700 [exp]	13.49	0.9241	ATGSL11.2
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Potri.005G253800 [exp]	15.00	0.9100	Pt-GLR3.4

Compare expression of checked genes

Potri.019G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.