Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 918 / 0 lectin protein kinase family protein (.1) AT2G19130 434 / 1e-139 S-locus lectin protein kinase family protein (.1) AT5G24080 355 / 1e-113 Protein kinase superfamily protein (.1) AT4G32300 358 / 6e-111 SD2-5 S-domain-2 5 (.1) AT4G00340 326 / 5e-99 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 326 / 2e-98 S-locus lectin protein kinase family protein (.1) AT5G60900 295 / 5e-88 RLK1 receptor-like protein kinase 1 (.1) AT2G41890 290 / 4e-86 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT5G20050 268 / 4e-81 Protein kinase superfamily protein (.1) AT1G61550 272 / 5e-79 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G086400 [exp] 1379 / 0 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 1304 / 0 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 1090 / 0 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 1076 / 0 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 422 / 8e-135 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G119200 [exp] 415 / 2e-132 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G103300 [exp] 410 / 9e-131 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1) Potri.013G121000 [exp] 407 / 2e-129 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 396 / 3e-125 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 1049 / 0 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10028711 [exp] 761 / 0 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 431 / 6e-138 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10000249 [exp] 397 / 2e-125 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 395 / 1e-124 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10029802 [exp] 389 / 8e-123 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 390 / 2e-122 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 382 / 4e-120 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 379 / 8e-119 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10043391 [exp] 376 / 4e-118 AT4G32300 795 / 0.0 S-domain-2 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G086200.1 pacid=42774391 polypeptide=Potri.019G086200.1.p locus=Potri.019G086200 ID=Potri.019G086200.1.v4.1 annot-version=v4.1 ATGAAACCTCAAAATCTTCTCTTTTCCCTGTTTCTCTTCTTCACTGTCACAACAGCACAACCAACAATCCAACCAGGCACCACCCTTTCAGCTGCAAACC CAGGCCAAACATGGTCGTCACCGAACAACACTTTCTACGTAGGATTTTCCCAAGTGGACTCCTCTTCTTATTACACCTTAACCATCAACTACAACGGTGG TGTCCCAATTTGGACAGCAGGTAATGCTACCACCACAGTTGACTCAAAGGGGTCCTTTCAATTCCTGCCATCTGGCAACCTCCGCCTCCTCAACGGGTCT GGCGCCGTTGTTTGGGATTCTAACACTGCTAGACTTGGTGTCACCACTGCTTCCCTTGATGATTTTGGTAATTTAGTGTTAAAGAATGGAACATCAACTG TTTGGTCTTCATTTGATAACCCAACTGATACGATAGTACCTAATCAGAATTTTAGTGTGAATCAAGTTTTAAGATCTGAGTCTTATCATTTTAGGTTTCT TAGTAACGGAAATCTCACTTTGAGATGGAATGATTTTATATTGTATTGGAATCAAGGGTTGAACTCTTCTCTTGATGTTAATTTGACTTCACCTACTTTG GGGTTGCAACGAACGGGGGTTTTGACAATTTTTGATGTTGCTTTTCCAAGTGGGTCGTATACTGTGGCATCTAGTAATGATTATGATGAAGGGGGCACAA GGTTGAGGTTTTTGAGGTTAGGAAAAGATGGGAACTTTAGGATGTATAGCACTGCTATAGGTACCGGAACTATAACTATGGTATGGTCTGCTTTGACTGA TCAATGTGAGGTTTTTGGTTATTGTGGGAATATGGGGATTTGTAGGTATAACGAGTCGAGTTCGAGTCCGAATTGTGGCTGTCCATCTGAGAATTTTGAG CCTGTTGATGTGAATGACAGTAGACAAGGGTGTAAAAGAAAAGTTGAGATCGAGAGTTGCGTGGGGAATGCTACTATGTTGGTGTTAGATAATGCGAAAT TCTTGACATATCAGCCTGAGACATTATCTCAGGTTTTCTCTAATGGGATATCAGCTTGTAGGCTGAATTGTCTTTCTCAAAGTTCTTGTATTGCTTCGAC GTCTTTGTCAGATGGAACTGGCATGTGTTACCTGAAAAATTCAGATTTTATTAGTGGATATCAGAATCCAGTGCTTCCCAGCACTTCTTATGTGAAAGTT TGTGGGCAAGCACAACCAAACCCTCCACCTGGTTTGCAGATTGCGGAGAAGAGCAAAAGCTCAAACTTGCGTGTCTGGGTTGTTCTTGTTGTTGTTGTGA TTACCCTTTTGGGTTTGATTGCTGTGGAAGGTGGTCTGTGGTGGTGGTGTTGTAGAAACAGTCCCAAGTTTGGCAGTTTGTCAGCTCAGTATGCCCTACT GGAGTATGCATCCGGTGCTCCAGTGCAGTTCTCATATAAGGAGCTGCAGCGTTCGACAAAACAGTTTAAAGAGAAGCTTGGAGCAGGAGGGTTTGGAGCT GTTTACAAAGGGGTTCTAGCTAATAGGACAGTTGTTGCAGTGAAGCAACTTGAGGGAATTGAACAGGGTGAGAAACAGTTCAGGATGGAGGTTGCAACTA TTAGCAGCACTCACCATTTGAATTTGGTCAGATTGATTGGTTTTTGCTCTGAGGGTCGTCATAGGCTTCTGGTTTACGAGTTCATGAAAAATGGGTCTCT TGATAATTTCCTTTTCACTACAGAAGAGCAGCCAGGAAGATTGTTGAATTGGGAGCAGAGGTTTAACATTGCCCTTGGAACTGCAAGAGGAATCACATAT CTTCACGAGGAATGTCGAGACTGCATTGTCCACTGTGACATAAAGCCAGAAAACATTCTCTTGGATGAGAACTACAATGCCAAGGTTTCTGATTTTGGTC TTGCAAAGCTCATAAGTCCCAGGGATCACAGATATAGGACACTAACAAGTGTTAGAGGGACAAGAGGATACTTGGCACCTGAGTGGCTTGCAAACCTTCC AATCACCTCCAAATCTGATATCTACGGTTACGGGATGGTTTTGTTGGAGATAGTGAGTGGCAGAAGGAATTTTGAGGTCTCAGCAGAAACCGACCGAAAA AAGTTCTCTGCCTGGGCTTATGAAGAGTTTGAGAAGAGTAATGTAACTGCAATTTTGGACCAAAGGCTTACAGACCAAGATGTGGATATGCAGCAAGTGA CAAGGGCAATTCAAGTGAGCTTTTGGTGCATCCAGGACCAACCATCTCAGAGGCCTAAGATGGGAAAAGTGGTGCAGATGCTGGAGGGAATTTCTGAGAT TGAGAACCCACCGGCACCAAAGGCTATAACAGAAGGTTCTATTCCTGGAACCAGCATATTGAGCAGCAGCAATGTGAGTGCTCTATCAACTTTTGCACCT TCAGCTCCCACTCCCTCATCTTCCTCATCATACCAGACTCTAGGAGTTTCACCATTAGCTTCTGGGAGAAATATCGAGAGGGCATCTTCGTCGCTGCTGC CTTGA
AA sequence Show only first row Show all	>Potri.019G086200.1 pacid=42774391 polypeptide=Potri.019G086200.1.p locus=Potri.019G086200 ID=Potri.019G086200.1.v4.1 annot-version=v4.1 MKPQNLLFSLFLFFTVTTAQPTIQPGTTLSAANPGQTWSSPNNTFYVGFSQVDSSSYYTLTINYNGGVPIWTAGNATTTVDSKGSFQFLPSGNLRLLNGS GAVVWDSNTARLGVTTASLDDFGNLVLKNGTSTVWSSFDNPTDTIVPNQNFSVNQVLRSESYHFRFLSNGNLTLRWNDFILYWNQGLNSSLDVNLTSPTL GLQRTGVLTIFDVAFPSGSYTVASSNDYDEGGTRLRFLRLGKDGNFRMYSTAIGTGTITMVWSALTDQCEVFGYCGNMGICRYNESSSSPNCGCPSENFE PVDVNDSRQGCKRKVEIESCVGNATMLVLDNAKFLTYQPETLSQVFSNGISACRLNCLSQSSCIASTSLSDGTGMCYLKNSDFISGYQNPVLPSTSYVKV CGQAQPNPPPGLQIAEKSKSSNLRVWVVLVVVVITLLGLIAVEGGLWWWCCRNSPKFGSLSAQYALLEYASGAPVQFSYKELQRSTKQFKEKLGAGGFGA VYKGVLANRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFTTEEQPGRLLNWEQRFNIALGTARGITY LHEECRDCIVHCDIKPENILLDENYNAKVSDFGLAKLISPRDHRYRTLTSVRGTRGYLAPEWLANLPITSKSDIYGYGMVLLEIVSGRRNFEVSAETDRK KFSAWAYEEFEKSNVTAILDQRLTDQDVDMQQVTRAIQVSFWCIQDQPSQRPKMGKVVQMLEGISEIENPPAPKAITEGSIPGTSILSSSNVSALSTFAP SAPTPSSSSSYQTLGVSPLASGRNIERASSSLLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.019G086200 [exp]	0	1
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029800 [exp]	11.13	0.9028
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.010G074400 [exp]	30.13	0.8857
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033550 [exp]	39.03	0.8737
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	60.44	0.8723
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.001G466166 [exp]	62.54	0.8629
AT1G47670			Transmembrane amino acid trans...		Potri.009G140800 [exp]	87.64	0.8550
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G027250 [exp]	108.99	0.8489
					Potri.004G104600 [exp]	158.97	0.8365
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G007600 [exp]	164.77	0.8311
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171300 [exp]	166.72	0.8345

Compare expression of checked genes

Potri.019G086200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.