Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 847 / 0 lectin protein kinase family protein (.1) AT4G32300 365 / 2e-113 SD2-5 S-domain-2 5 (.1) AT2G19130 364 / 4e-113 S-locus lectin protein kinase family protein (.1) AT5G24080 350 / 7e-112 Protein kinase superfamily protein (.1) AT4G00340 321 / 5e-97 RLK4 receptor-like protein kinase 4 (.1) AT5G60900 288 / 2e-85 RLK1 receptor-like protein kinase 1 (.1) AT5G20050 265 / 4e-80 Protein kinase superfamily protein (.1) AT5G35370 271 / 4e-78 S-locus lectin protein kinase family protein (.1) AT2G41890 267 / 1e-77 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT1G66920 247 / 1e-71 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115800 [exp] 1255 / 0 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 1046 / 0 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 1023 / 0 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 1001 / 0 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.T085100 [exp] 379 / 7e-119 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 377 / 2e-118 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 375 / 2e-117 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 373 / 1e-116 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 372 / 2e-116 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 947 / 0 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10028711 [exp] 666 / 0 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 394 / 1e-123 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10002917 [exp] 358 / 1e-110 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 354 / 4e-109 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10013252 [exp] 352 / 7e-109 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10024348 [exp] 346 / 8e-106 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 342 / 7e-105 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 340 / 2e-104 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10043391 [exp] 339 / 6e-104 AT4G32300 795 / 0.0 S-domain-2 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.019G086300.1 pacid=42773020 polypeptide=Potri.019G086300.1.p locus=Potri.019G086300 ID=Potri.019G086300.1.v4.1 annot-version=v4.1 ATGAACCTCCTCCACTCTCTTCTCCTACTCCTTCCTCTCCTCCTCTTCATCACCACTAAGTCAACAGCAACCATACCACCAGGCTCCTCTCTTTATGCCT CTAACACAAGCCGAACCTGGTCATCTCCAAACAACACTTTCTTTCTGGGCTTTACTCAAGTGGGCACTTCCTACACTGTTTCCATCTCCTACGCTGCTGG AGTTGCCATCTGGACAACCGACAGTGTTGTCAGTGGCACTGCCTCTGCAGCTGTTGTTGACAGCGGTGGAGTATTCCAGTTCCTCCGCAACGGCAATCTC CGCCTCGTCAACGGTTCAGGTGCCACCGTGTGGACCTCCAACACTGCCAAACTTGGTGTCACTTCTGCTTCCCTTGATGACACGGGAAATCTAGTACTGG CAGCCAACACTTTTGCTGTATGGTCCAGTTTTGAAAACCCAACCGACACTCTTGTCCCTTCACAGAACTTAACAGTAAACCAAACTTTACGATCTGGGGT TCACTCTTTCCGTCTTCTAAGCAATGGAAATATTACTTTGACATGGAATGACAGTGTTGTGTACTGGAATCAAGGCTTGAGCTCTCTTTCAGCTTTGAAC GTGACTTCTCCAACCTTGCGATTGCAGCCAAATGGGATCCTAACTCTTTCAGATGCTAGTTTGAGAAGATCAGAGAATGTTGCTTTTGGCAATGATTATG GAGAAGGGGCTGATGTAATGAGATTTTTGAGGTTTAGTGATGGGAATTTGAGAATGTATAGTGGTGGAACTACAACTATGACATGGGCTGTTTTAGCGGA TCAGTGTCAGGTTTATGGATACTGTGGAAACATGGGGATCTGTAGTTATAACGAATCAAATTCGAGTCCGATCTGTAAATGCCCATCTCTGAATTTTGAG GCAGTAGATGTGAATGATAGGAGAAAGGGGTGTAAGAGAAAAGTGGAGGTTGAGGATTGTGTGGGGAATGTAACAATGCTGGAGTTGAAGCAGACCAAAT TTTTTACTTTCCAGGCTCAGCAAATTGTTTCTATTGGGATAACAGCTTGTAGAGTGAATTGTTTATCAAGTACTTCTTGCTTTGCTTCCACTTCTTTCTC AGATACAAATGTATGGTGTTACTTGAAAAACTCACCTGATTTTGTTAGTGGATATCAGGGTCCAGTGCTTCTTAGTACATCTTATGTAAAGGTTTGTGGA ACAGTACAGCCAAATCCTTCGCCTTTGCAGCAGAGTGGAGGGGACAAAAAGTGCTGGAAATTGCGGGTTTGGGTTGTCGGTTTTGTGGTTGTGGTCACTA TTTTGGTTATGGCCGCTTTAGCGGGTTTATTTTGGTGGTTTTGTTGTAAAACTAGTCCCAAATTTGGAGGTGTGTGGGCTCAGTATACACTTCTTGAATA TGCCTCTGGTGCTCCTGTTCAGTTTTCATATAAGGATCTGCATCGCTGGACAAAGAGGTTCAAGGATAAGCTTGGAGCAGGAGGATTTGGAGCTGTTTAT AGAGGAGTTCTAGCTAACAGAACAGTGGTTGCAGTGAAGCAACTTGAGGGAATTGAACAAGGTGAGAAACAGTTTCGGATGGAAGTTGCAACTATAAGCA GTACTCACCATTTGAATTTGGTCAGATTGATTGGATTTTGCTCCGAAGGGCGTCACAGGCTTTTAGTATACGAGTTCATGAAAAATGGGTCCTTAGATCA TTTCCTGTTTAGGACAGAAGATCAGTCAGAGAAATTGTTGAATTGGAAGAACAGGTTCAACATTGCTCTTGGGACTGCAAGAGGAATCACATATCTTCAC GAGGAATGTCGAGATTGCATTGTTCATTGTGATATCAAGCCAGAAAACATTCTGTTGGATGAAAATTTCAATGCCAAGGTATCTGATTTTGGCCTTGCAA AGCTTATCAGCACGAAGGACCAAAGATACCGGTCCTTGACAAGCATTAGAGGCACTAGAGGGTATTTGGCACCAGAATGGCTAGCAAACCTCCCAATAAC ATCAAAATCTGATGTTTACAGTTACGGGATGGTTTTGCTGGAGATAGTGAGTGGGAGAAGGAACTTTGAGGTCTCAGCAGAAATCAATGAAAAGAAGTTC TCAGAGTGGGCTTATGGGGAGTTTGAGAAGGGTAATGTGGCGGCAATTGTTGACAAAAGACTTGCTGATCAGGGTGTGGACATGGAACAAGTGATGAGGG CTGTTCAGGTTAGCTTTTGGTGCTTTCAGGAGCATCCTTCTCAAAGGCCAACAATGGGAAAAGTAGTGCAGATGCTTGAGGGAATTATAGAGATTGCAAT GCCACCAGCACCCAAGGCCTTGACAGAAGGGTCTAGTAGTGGAACAAGTACGAGTTTGAGCAGTAAAGATGGTGCTCACTCTACTTATGAAGCCTCGGCT CCACCTCCCTCTTCATCTTCATCATTTCAAACTGCAGGCATATCGCCTTTCATCTCAGAGAGGATTATGGAGAAGCAATCTTCATCATTTTTAGGATCAT TTCAAACTAAATCTCGTTAG
AA sequence Show only first row Show all	>Potri.019G086300.1 pacid=42773020 polypeptide=Potri.019G086300.1.p locus=Potri.019G086300 ID=Potri.019G086300.1.v4.1 annot-version=v4.1 MNLLHSLLLLLPLLLFITTKSTATIPPGSSLYASNTSRTWSSPNNTFFLGFTQVGTSYTVSISYAAGVAIWTTDSVVSGTASAAVVDSGGVFQFLRNGNL RLVNGSGATVWTSNTAKLGVTSASLDDTGNLVLAANTFAVWSSFENPTDTLVPSQNLTVNQTLRSGVHSFRLLSNGNITLTWNDSVVYWNQGLSSLSALN VTSPTLRLQPNGILTLSDASLRRSENVAFGNDYGEGADVMRFLRFSDGNLRMYSGGTTTMTWAVLADQCQVYGYCGNMGICSYNESNSSPICKCPSLNFE AVDVNDRRKGCKRKVEVEDCVGNVTMLELKQTKFFTFQAQQIVSIGITACRVNCLSSTSCFASTSFSDTNVWCYLKNSPDFVSGYQGPVLLSTSYVKVCG TVQPNPSPLQQSGGDKKCWKLRVWVVGFVVVVTILVMAALAGLFWWFCCKTSPKFGGVWAQYTLLEYASGAPVQFSYKDLHRWTKRFKDKLGAGGFGAVY RGVLANRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDHFLFRTEDQSEKLLNWKNRFNIALGTARGITYLH EECRDCIVHCDIKPENILLDENFNAKVSDFGLAKLISTKDQRYRSLTSIRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEIVSGRRNFEVSAEINEKKF SEWAYGEFEKGNVAAIVDKRLADQGVDMEQVMRAVQVSFWCFQEHPSQRPTMGKVVQMLEGIIEIAMPPAPKALTEGSSSGTSTSLSSKDGAHSTYEASA PPPSSSSSFQTAGISPFISERIMEKQSSSFLGSFQTKSR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.019G086300 [exp]	0	1
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.003G106400 [exp]	1.73	0.8288
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Potri.005G190500 [exp]	3.00	0.8146
					Potri.009G010450 [exp]	4.00	0.8222
AT4G13990			Exostosin family protein (.1)		Potri.001G321000 [exp]	4.24	0.8212
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066800 [exp]	6.00	0.8439
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.001G187500 [exp]	7.48	0.8581
					Potri.004G114450 [exp]	7.48	0.8200
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395400 [exp]	8.36	0.8040
AT1G68070			Zinc finger, C3HC4 type (RING ...		Potri.010G106300 [exp]	11.31	0.7959
AT3G63300		FKD1	FORKED 1 (.1.2)		Potri.005G213800 [exp]	13.03	0.8219

Compare expression of checked genes

Potri.019G086300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.