Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 903 / 0 lectin protein kinase family protein (.1) AT2G19130 430 / 6e-138 S-locus lectin protein kinase family protein (.1) AT4G32300 359 / 2e-111 SD2-5 S-domain-2 5 (.1) AT5G24080 342 / 8e-109 Protein kinase superfamily protein (.1) AT4G00340 328 / 1e-99 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 315 / 2e-94 S-locus lectin protein kinase family protein (.1) AT2G41890 295 / 9e-88 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT5G60900 276 / 8e-81 RLK1 receptor-like protein kinase 1 (.1) AT5G20050 266 / 2e-80 Protein kinase superfamily protein (.1) AT1G65800 257 / 3e-73 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G086200 [exp] 1344 / 0 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 1281 / 0 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 1040 / 0 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 1018 / 0 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 420 / 5e-134 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G119200 [exp] 401 / 4e-127 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G103300 [exp] 399 / 1e-126 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1) Potri.006G254600 [exp] 389 / 2e-122 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.001G014700 [exp] 382 / 5e-120 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 1035 / 0 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10028711 [exp] 743 / 0 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 418 / 6e-133 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10000249 [exp] 392 / 3e-123 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 387 / 2e-121 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10029802 [exp] 384 / 6e-121 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 375 / 7e-117 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 373 / 9e-117 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10043391 [exp] 371 / 5e-116 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10042266 [exp] 357 / 6e-111 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G086400.1 pacid=42773983 polypeptide=Potri.019G086400.1.p locus=Potri.019G086400 ID=Potri.019G086400.1.v4.1 annot-version=v4.1 ATGAAAACTCAAAATCTCCCCTTCTATCTACTTCTCTTCTTCTGCACCACAGCAACATCACAAACAACGATCCAACTAGGCGCCACTCTATCAGCTTCAA ACCCAAACAAAACCTGGTCATCACCAAACAACTCATTCTACATTGGATTTTCCCAAGTGGGCTTCTCTTCTTCTTACACCTTAACCATCAACTACAATGG TGGTGTCCCAATTTGGACAGCAGGCAATGCCGCCACCACAGTTGACTCAAAGGGTTCCTTTCAGTTCCTGTCCTCCGGCAACCTCCGCCTCCTTAACGGC TCTGGCGCCATCGTTTGGGACTCTAACACTGCTCGCCTTGGTGTCACCACTGCTTCACTTGATGATTTTGGTAATTTAGTGTTAAAGAATGGAACTTTTT TTGTTTGGTCTTCATTCGATAACCCAACTGATACGATAGTGCCTAATCAGACTTTTACTGTGAATCAAGTTTTAAGATCTGGGTCTTATTCTTTTAGGTT TCTTAGTACTGGAAATCTCACTTTGAGATGGAATGATAATATAGTATATTGGAATAAAGGGTTGAACTCTTCTGCTGATGCTAATTTGACTTCACCTGCT TTGGGGTTGCAACCAAATGGGATTTTGACAATTTTTGATGTTGCTTTTACAAGTGGGTCATATATTGTGGCATATAGTAATGATTATGCTGAAGGGAGCA CAAGGTTGAGGTTTCTGAGGTTAGAAAAAGATGGGAACTTTAGGATGTATAGCACTGATATAGGTAGCGGAACTGCAACTATGGTATGGTCTGCTTTGAC TGATCAATGTGAGATTTTTGGTTATTGTGGGAATATGGGGATTTGTAGTTATAATGAGTTGAGTTCGAGTTTGAGTCCGACTTGTGGTTGTCCATCTGAG AATTTTGAGCCTGTTGATGTGAATGATAGTAGACAAGGGTGTAAAAGAAAAGTTGAGATTGAGAGTTGTGTGGGGAGTGCTACCATGTTGGTGTTAGATA ATGTGAAATTCTTGACTTATCTGCCTGAGACAGTATCTCAGGTTTTCTTCGTGGGGATATCAGCTTGTAGGTTGAATTGTCTTTCTCAAAGTTCTTGTAT TGCTTCAACATCTTTGTCGGATGGAACTGGCTTGTGTTACCTGAAAAATCAAGGTTTTATTAGTGGATATCAGAATCCAGCGCTTCCCAGTACTTCATAT GTGAAAATTTGTGGGCCAGCACGACCAAACCCTCCACCTGGTGTGCAGATTGCAGGGAAGAGCAAAAGTTCGAGATTGCGTGTCTGGGTTGTTCTTGTTG TTGTTGTGATTACCCTTTTGGGTTTGATTGCTGTGGAGGGTGGTCTGTGGTGGTGGTGTTGTAGAAACAGTCCCAAGTTTGGCAGTTTGTCAGCTCAGTA TGCACTACTGGAGTATGCATCTGGTGCTCCAGTGCAGTTCTCATATAAGGAGCTGCAGCATTCGACAAAAGAGTTTAAAGAGAAGCTTGGAGCAGGAGGG TTTGGAGCTGTTTACAAAGGGGTTCTAGATAATAGAACAGTTGTTGCAGTTAAGCAACTTGAGGGAATTGAGCAGGGTGAGAAACAGTTCAGGATGGAGG TTGCAACTATTAGCAGCACTCACCATTTGAATTTGATCAGATTGATTGGTTTTTGCTCTGAGGGTCGTCATAGGCTGTTGGTTTATGATTTCATGAAAAA CGGGTCTCTTGATAATTTCCTTTTCACTTCAGAAGAGCAGCCAGGAAGATTGTTGAATTGGGAGCAGAGGTTTAACATTGCCCTTGGGACTGCAAGAGGA ATCACATATCTTCATGAGGAATGTCGAGACTGCATTGTTCACTGTGACATCAAGCCAGAGAACATTCTCTTGGATGAGAACTACAATGCCAAGGTGTCTG ACTTTGGTCTTGCAAAGCTTATAAATCCTGAGGATCACAGATATAGGACACTGGTCAGTGTTAGAGGGACAAGAGGATATTTGGCACCAGAGTGGATTGC AAATCTTCCAATAACTTCCAAATCTGATATCTACAGTTATGGGATGGTTTTGTTGGAGATAGTGAGTGGCAGAAGGAACTATGAAGTCTCATCAGAGACA AACCGTAAAAAGTTCTCTGTCTGGGCTTGCGAAGAGTTTGAGAAGGGTGATGTTAATGCAATTTTGGACCAAAGGCTTACACACCAAGATTTGGATCTGG ATCAAGTGACAAGGGCTATTCAAGTGAGCTTTTGGTGCATCCAGGAGCAACCATCTCAAAGGCCAACGATGGGGAAAGTGGTGCAGATGCTGGAAGGAAT TTCTGAGATTGAGAGACCACCGGCTCCAAAGACAATAACAGGAGGTTCTTTTGGTGGAAGTAATGTAAGTGTGAGTAGCAATGTCAGTACTCTCTCGACT TTTGAGGTTTTAGCACCCGCTCCTTCATCTTCCTCATCATATCAGACTATAGGAATTTCACCTTTAGCTTCAGTAAGAAATATAGAGAGGACTTCATCAC TGCTGCATTCAGACTCAAACTGA
AA sequence Show only first row Show all	>Potri.019G086400.1 pacid=42773983 polypeptide=Potri.019G086400.1.p locus=Potri.019G086400 ID=Potri.019G086400.1.v4.1 annot-version=v4.1 MKTQNLPFYLLLFFCTTATSQTTIQLGATLSASNPNKTWSSPNNSFYIGFSQVGFSSSYTLTINYNGGVPIWTAGNAATTVDSKGSFQFLSSGNLRLLNG SGAIVWDSNTARLGVTTASLDDFGNLVLKNGTFFVWSSFDNPTDTIVPNQTFTVNQVLRSGSYSFRFLSTGNLTLRWNDNIVYWNKGLNSSADANLTSPA LGLQPNGILTIFDVAFTSGSYIVAYSNDYAEGSTRLRFLRLEKDGNFRMYSTDIGSGTATMVWSALTDQCEIFGYCGNMGICSYNELSSSLSPTCGCPSE NFEPVDVNDSRQGCKRKVEIESCVGSATMLVLDNVKFLTYLPETVSQVFFVGISACRLNCLSQSSCIASTSLSDGTGLCYLKNQGFISGYQNPALPSTSY VKICGPARPNPPPGVQIAGKSKSSRLRVWVVLVVVVITLLGLIAVEGGLWWWCCRNSPKFGSLSAQYALLEYASGAPVQFSYKELQHSTKEFKEKLGAGG FGAVYKGVLDNRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLIRLIGFCSEGRHRLLVYDFMKNGSLDNFLFTSEEQPGRLLNWEQRFNIALGTARG ITYLHEECRDCIVHCDIKPENILLDENYNAKVSDFGLAKLINPEDHRYRTLVSVRGTRGYLAPEWIANLPITSKSDIYSYGMVLLEIVSGRRNYEVSSET NRKKFSVWACEEFEKGDVNAILDQRLTHQDLDLDQVTRAIQVSFWCIQEQPSQRPTMGKVVQMLEGISEIERPPAPKTITGGSFGGSNVSVSSNVSTLST FEVLAPAPSSSSSYQTIGISPLASVRNIERTSSLLHSDSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.019G086400 [exp]	0	1
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	3.31	0.8395
AT2G41890			curculin-like (mannose-binding...		Potri.001G006100 [exp]	4.00	0.7679
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.007G074028 [exp]	5.74	0.8247
AT2G22960			alpha/beta-Hydrolases superfam...		Potri.001G291450 [exp]	6.32	0.8369
					Potri.014G103100 [exp]	8.77	0.7818
AT4G26840		ATSUMO1, SUMO1,...	ARABIDOPSIS THALIANA SMALL UBI...		Potri.002G224700 [exp]	10.58	0.7958	Pt-SUM1.1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050180 [exp]	10.95	0.8058
					Potri.011G046112 [exp]	13.56	0.8183
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.008G125700 [exp]	21.07	0.7774	RHA2.1
AT5G57970			DNA glycosylase superfamily pr...		Potri.018G106900 [exp]	23.62	0.7394

Compare expression of checked genes

Potri.019G086400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.