Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05350 64 / 2e-12 RING/U-box superfamily protein (.1) AT5G54990 64 / 2e-12 RING/U-box superfamily protein (.1) AT1G18770 61 / 3e-12 RING/U-box superfamily protein (.1) AT4G32600 61 / 9e-11 RING/U-box superfamily protein (.1) AT1G18760 59 / 1e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G26800 59 / 2e-10 RING/U-box superfamily protein (.1) AT4G12190 55 / 2e-10 RING/U-box superfamily protein (.1) AT3G19910 59 / 3e-10 RING/U-box superfamily protein (.1) AT5G37270 58 / 3e-10 RING/U-box superfamily protein (.1) AT1G57730 57 / 3e-10 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116000 [exp] 182 / 6e-58 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1) Potri.019G086601 [exp] 129 / 4e-37 AT1G14200 60 / 3e-11 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 65 / 3e-12 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.005G090800 [exp] 64 / 6e-12 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 62 / 2e-11 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 61 / 3e-11 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.006G164516 [exp] 58 / 5e-11 AT3G46620 63 / 6e-13 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G062100 [exp] 61 / 6e-11 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.018G034400 [exp] 61 / 8e-11 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016416 [exp] 66 / 8e-13 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10019703 [exp] 66 / 9e-13 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10040389 [exp] 64 / 1e-11 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10017385 [exp] 61 / 1e-10 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10010182 [exp] 61 / 1e-10 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10011392 [exp] 60 / 1e-10 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10025612 [exp] 59 / 4e-10 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 59 / 6e-10 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10020258 [exp] 58 / 1e-09 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10034644 [exp] 57 / 1e-09 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.019G086500.1 pacid=42774611 polypeptide=Potri.019G086500.1.p locus=Potri.019G086500 ID=Potri.019G086500.1.v4.1 annot-version=v4.1 ATGGAAGTTACAAGAGTTGATGTTAACCTACATACAGTGAACACAGATGTGTTCGATCCGGGGAATTATGATCCTATGTTCCTTGTTCAAATTACGTTAC AAAGAAAGCTTGAAATGTGGTTGAGTGTCATAGACCAAGAAGAATTACTAATGGCCGGTCAACACCAGATTGATTCAGAGTCAGGCTGTGTGTTCGAAGT TCCTATTCAAGAAGTTGCCGTGCCTGCTTCATTCATCCATTACCTTGCCCAAAGGATTTCTGGTTTCAACTTTGATGCTTCCCTCTGTGTGGATTTAGCC TCATTGATTGCTTCCCATGCTTACCATTTAGAGGGACATTGTAGAGGATTCTATGTGTCAGCTCATGTAGACCTTGTTGATGTAGATGTAAACGAAGTTG CGGCCTCGGAGATTAGGCCAATATTAGATAGCGAAGGTTTCACTCTACCAAGGGGTGCATCGGAGACAGTGTTGAAGAAGGAGAGGCTTTGTAAGAAGCA GGGGGGTGCTGATTCTTCTTCGGGTAGTACTTGTGTGGTTTGCTTGGAGGACTTTTCTAGTTCAGTTAAGCTCACAAAGTTACCTTGCTCTCACGTGTTT CATGACAAATGCATCTTTCGTTGGCTGCTATACTCTAAATCCTGCCCAATTTGCAGAACAGAAGTGGAATAG
AA sequence Show only first row Show all	>Potri.019G086500.1 pacid=42774611 polypeptide=Potri.019G086500.1.p locus=Potri.019G086500 ID=Potri.019G086500.1.v4.1 annot-version=v4.1 MEVTRVDVNLHTVNTDVFDPGNYDPMFLVQITLQRKLEMWLSVIDQEELLMAGQHQIDSESGCVFEVPIQEVAVPASFIHYLAQRISGFNFDASLCVDLA SLIASHAYHLEGHCRGFYVSAHVDLVDVDVNEVAASEIRPILDSEGFTLPRGASETVLKKERLCKKQGGADSSSGSTCVVCLEDFSSSVKLTKLPCSHVF HDKCIFRWLLYSKSCPICRTEVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05350			RING/U-box superfamily protein...		Potri.019G086500 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.003G201900 [exp]	4.58	0.7554
AT3G25400			unknown protein		Potri.014G148200 [exp]	7.48	0.7659
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.001G367900 [exp]	14.86	0.6996
AT1G72430			SAUR-like auxin-responsive pro...		Potri.003G071000 [exp]	16.24	0.7425
					Potri.014G103100 [exp]	20.49	0.7113
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.014G146100 [exp]	25.41	0.6857	Pt-XTR7.1
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052400 [exp]	25.88	0.7158
AT5G23300		PYRD	pyrimidine d (.1)		Potri.007G074201 [exp]	29.25	0.7126
AT3G53400			unknown protein		Potri.006G128800 [exp]	30.59	0.6791
AT5G63060			Sec14p-like phosphatidylinosit...		Potri.012G088350 [exp]	34.49	0.6970

Compare expression of checked genes

Potri.019G086500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.