Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34270 656 / 0 Exostosin family protein (.1) AT2G35100 248 / 5e-77 ARAD1 ARABINAN DEFICIENT 1, Exostosin family protein (.1) AT1G67410 236 / 9e-73 Exostosin family protein (.1) AT1G74680 236 / 2e-72 Exostosin family protein (.1) AT5G44930 235 / 2e-72 ARAD2 ARABINAN DEFICIENT 2, Exostosin family protein (.1.2) AT3G45400 231 / 3e-70 exostosin family protein (.1) AT5G16890 224 / 4e-67 Exostosin family protein (.1) AT3G03650 223 / 8e-67 EDA5 embryo sac development arrest 5, Exostosin family protein (.1) AT1G21480 76 / 9e-15 Exostosin family protein (.1.2) AT4G38040 74 / 5e-14 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116200 [exp] 794 / 0 AT1G34270 660 / 0.0 Exostosin family protein (.1) Potri.012G124600 [exp] 241 / 7e-74 AT2G35100 604 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.015G124800 [exp] 238 / 5e-73 AT2G35100 581 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Potri.008G034500 [exp] 229 / 4e-70 AT1G67410 557 / 0.0 Exostosin family protein (.1) Potri.002G210000 [exp] 230 / 7e-70 AT1G74680 565 / 0.0 Exostosin family protein (.1) Potri.019G049800 [exp] 222 / 2e-66 AT5G16890 693 / 0.0 Exostosin family protein (.1) Potri.019G044600 [exp] 222 / 2e-66 AT3G45400 607 / 0.0 exostosin family protein (.1) Potri.013G067400 [exp] 217 / 2e-64 AT3G45400 587 / 0.0 exostosin family protein (.1) Potri.005G055000 [exp] 82 / 3e-19 AT3G45400 145 / 5e-43 exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031610 [exp] 695 / 0 AT1G34270 685 / 0.0 Exostosin family protein (.1) Lus10033734 [exp] 684 / 0 AT1G34270 684 / 0.0 Exostosin family protein (.1) Lus10038355 [exp] 249 / 1e-77 AT2G35100 605 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10036219 [exp] 251 / 8e-77 AT2G35100 611 / 0.0 ARABINAN DEFICIENT 1, Exostosin family protein (.1) Lus10015791 [exp] 241 / 2e-74 AT1G67410 595 / 0.0 Exostosin family protein (.1) Lus10037016 [exp] 241 / 3e-74 AT1G67410 590 / 0.0 Exostosin family protein (.1) Lus10003870 [exp] 223 / 9e-67 AT3G45400 644 / 0.0 exostosin family protein (.1) Lus10039145 [exp] 221 / 3e-66 AT5G16890 679 / 0.0 Exostosin family protein (.1) Lus10002060 [exp] 220 / 7e-66 AT1G74680 537 / 0.0 Exostosin family protein (.1) Lus10020308 [exp] 216 / 5e-64 AT3G45400 622 / 0.0 exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.019G086800.1 pacid=42774528 polypeptide=Potri.019G086800.1.p locus=Potri.019G086800 ID=Potri.019G086800.1.v4.1 annot-version=v4.1 ATGCCGCCACCAAAGACCACCACCACCACACTTCCATGCTCAATCCCAACTCTCTTCCTCGCTTTCACTACCCTCTCTTTCCTCTGCTTCTCCCTCTTCT TCCTCTACAACAAAAACCCATCTTTCCCTAATCCGCAAACCACCCTCCAAACCTCTCAAAATTCCATCAAAGTCTATGTAGCTGACCTCCCTAGATCTCT CAACTACGGCCTCCTTGACCAATACTGGTCCTCCTCTATACCTGATACCCGTATTAGCTCCGACCCAGATCATCAGATCCGACCCAAACCCACCAAGAAC CAAAAATTTCTTGATTACCCTGAGAATCCTTTGATTAAGCAGTACAGTGCTGAGTACTGGATCACTGGTGACTTAATGACACCAGAGAAGTTAAAGTTTC GATCTTTTGCTAAAAGGGTGTTTGATTGTAATGAAGCTGATGTTGTTTTCGTGCCCTTTTTTGCTACACTGAGTGCTGAAATGGAGCTTGCAAAGGGAAA GGGAAGTTTTAGGAGAAAAGAAGGGAATGAGGATTATAGAAGGCAGAAGCAAGTGGTGGATATTGTGAGAAATTCGGATGCGTGGAAGCGATCTGGCGGG AAAGATCATGTCTTTGTTCTTACAGACCCAGTTGCGATGTGGCATTTAAGAGCTGAGATAGCCCCAGCTATTCTACTGGTGGTAGACTTTGGTGGGTGGT ATAGGCTTGACTCGAAGTCATCGAATGGTAGTTCGTCAGATATGATACAGCATACCCAAGTCTCACTGCTGAAAGATGTGATTGTTCCATACACACATCT ACTTCCTAGATTGCAGTTATCAGAGAACAAGAAACGCAGCACCCTTCTTTATTTTAAAGGAGCCAAACATAGGCACCGGGGAGGCATAGTTCGAGAAAAA TTGTGGGACTTGCTGGTTAATGAGCCTGGAGTTATCATTGAAGAAGGATTCCCTAATGCTACTGGGAGGGAGCAGTCCATTAGAGGGATGAGATCATCAG AATTCTGTTTGCACCCAGCTGGGGACACCCCCTCTTCTTGCCGGCTATTCGATGCCATCCAAAGCCTGTGTATACCTGTTGTTGTAAGTGACAACATTGA GCTGCCATTTGAAGGCATGGTAGATTACACAGAATTCGCAGTTTTTGTTGCAGTTGATGATGCCTTGAAGCCCAGATGGCTGGTGGATCGTCTCAGAAGC ATTTCTGTGAAGCAGAGGAATGAATTCCGTAGAAATATGGCTAAGGTTCAACCGATTCTTCAGTATGATAATGGTCATCCAGGTGGTATTGGTCCTATTT CTCCAGATGGTGCAGTGAATCACATATGGAAAAAGGTACTTCAAAAATTGCCTGCCATTAAGGAAGCTGTTGTTCGAGAGAGAAGAAAACCACCTGGTGT ATCAGTTCCTTTGCGTTGCCATTGTACCTGA
AA sequence Show only first row Show all	>Potri.019G086800.1 pacid=42774528 polypeptide=Potri.019G086800.1.p locus=Potri.019G086800 ID=Potri.019G086800.1.v4.1 annot-version=v4.1 MPPPKTTTTTLPCSIPTLFLAFTTLSFLCFSLFFLYNKNPSFPNPQTTLQTSQNSIKVYVADLPRSLNYGLLDQYWSSSIPDTRISSDPDHQIRPKPTKN QKFLDYPENPLIKQYSAEYWITGDLMTPEKLKFRSFAKRVFDCNEADVVFVPFFATLSAEMELAKGKGSFRRKEGNEDYRRQKQVVDIVRNSDAWKRSGG KDHVFVLTDPVAMWHLRAEIAPAILLVVDFGGWYRLDSKSSNGSSSDMIQHTQVSLLKDVIVPYTHLLPRLQLSENKKRSTLLYFKGAKHRHRGGIVREK LWDLLVNEPGVIIEEGFPNATGREQSIRGMRSSEFCLHPAGDTPSSCRLFDAIQSLCIPVVVSDNIELPFEGMVDYTEFAVFVAVDDALKPRWLVDRLRS ISVKQRNEFRRNMAKVQPILQYDNGHPGGIGPISPDGAVNHIWKKVLQKLPAIKEAVVRERRKPPGVSVPLRCHCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34270			Exostosin family protein (.1)		Potri.019G086800 [exp]	0	1
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Potri.013G157500 [exp]	2.23	0.8273
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.008G113900 [exp]	12.36	0.8136
					Potri.005G233101 [exp]	13.19	0.8204
AT1G76270			O-fucosyltransferase family pr...		Potri.005G249900 [exp]	13.41	0.7975
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.019G033300 [exp]	16.73	0.7573	TBP1.2,GTF902
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	19.89	0.8033
AT1G15780			unknown protein		Potri.003G013000 [exp]	22.97	0.8166
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060126 [exp]	25.92	0.8195
AT5G48890	C2H2ZnF	LATE	LATE FLOWERING, C2H2-like zinc...		Potri.014G178200 [exp]	28.91	0.7704
AT5G47540			Mo25 family protein (.1)		Potri.016G011300 [exp]	30.16	0.8026

Compare expression of checked genes

Potri.019G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.