Potri.019G087000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G34260 1189 / 0 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
AT1G71010 415 / 1e-119 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
AT3G14270 394 / 4e-112 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
AT4G33240 393 / 7e-112 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
AT1G10900 79 / 3e-14 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
AT1G77740 77 / 8e-14 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1)
AT1G60890 74 / 5e-13 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
AT1G21980 74 / 1e-12 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
AT3G09920 73 / 1e-12 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
AT3G07960 72 / 3e-12 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G116400 2658 / 0 AT1G34260 1184 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Potri.010G113700 442 / 2e-128 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Potri.003G072300 438 / 9e-127 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Potri.008G128800 425 / 9e-123 AT1G71010 1714 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Potri.001G163200 398 / 2e-113 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Potri.001G027900 74 / 6e-13 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Potri.003G019100 73 / 1e-12 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Potri.002G088100 73 / 1e-12 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Potri.019G015768 72 / 2e-12 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028710 1580 / 0 AT1G34260 1186 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Lus10006051 1559 / 0 AT1G34260 1175 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1)
Lus10035998 432 / 4e-125 AT1G71010 1660 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Lus10005176 399 / 2e-114 AT4G33240 1046 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Lus10038127 394 / 1e-112 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Lus10005173 390 / 5e-111 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Lus10038129 385 / 9e-110 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Lus10016702 364 / 2e-102 AT1G71010 1149 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1)
Lus10020821 76 / 2e-13 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Lus10029661 76 / 2e-13 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00118 Cpn60_TCP1 TCP-1/cpn60 chaperonin family
CL0016 PKinase PF01504 PIP5K Phosphatidylinositol-4-phosphate 5-Kinase
Representative CDS sequence
>Potri.019G087000.4 pacid=42774217 polypeptide=Potri.019G087000.4.p locus=Potri.019G087000 ID=Potri.019G087000.4.v4.1 annot-version=v4.1
ATGTGTAGCATGTGTCATTATTGTGGTGCTGATCGGACTAAGTTGAAGGATGAAAAGAAGAAACTAGAGAATGGAGGTTGTTTAAAACTAAATGGTGAAG
AGCCCATTTGGTCTTGCCGACTTTGTCAGGAAAAGCAGGAACCAGATTTGATGAACCGTGATGGTTCGAGTCATTCTATATTACCACTGATCAGTCCAGC
TACTACGTTGCCTAGCAGTGATAGATTTATGTCTAGCTGCAGCGATCTTTATGTCGATGTAAACTCGCATGACTGGGCTCATCAAGAGGAAGAAGCAGCA
CGCAGTGCTCAGAAGGATCTCAGTTATGGGATGAATGACCAACTGCACAACTCAAGATTGGAAGCTCCTTTAAATAGAGTGGATGGATTACTTAAAGCGA
CAGAAAACAACTTGAAGGATAGTCATAACGGAACTGATAGAGAGACAGTGAGAGATGTAGAAATTGTGGAACTTCTTCACGGTCAAGAAGCAAAAGATAA
TGCTTTTGAGAAATGTGTTGGATCTTCAAACGAAGGAAGTGATGTTTCTCAAATCAGTGATGATGAAGTAGATGCGCAGGTTTGGGAGCCTCCTGAAGCA
GAAGATCCAGAGGATGATTTGGATGGCAGTGTGGCTTTTATCGATGACGACGACGATGAGTGTGGTGACGGAACAGAATGGGGTAAACCTAGTTCTTTGA
GTTACTCGAGGGATGAAGGCAGTCGGAGCTTCAAGTTCAAAGAAGAAAAACAAAAGGCAATGGACGAAGTAGTTAACGTGAAATTCAAGGCTGTCGTGAG
TCAACTTCTTAAAACTGCAGGTGTTGCCTCTCTGATGAGAGATGGTGAAAGTTGGGTGGATATTGTTACTTATTTATCATGGGAAGCTGCTTCGTTTTTG
AAGCCTGAAGCAATAGATCGGAAAGCAATGGATCCAGATGGCTATGTGAAAGTGAAATGCATTGCAACTGGTTCTCGTAGTGAAAGTGAAGTAGTGAAAG
GCTTGGTCTTTAAAAAGCGTGCTGCTCACAAGCACATGCCCACTAAGTACAAGAACCCCAGGTTGTTGCTGATCCAAGGTGTGCTTGGTCAGTCTTCAAG
TGGATTGTCATCGTTTAAATCAATGGAGCAGGAAAAGGATAATCTGAGGGCTCTCATTGAGACCATAGAAATGTGCCATCCAAATGTAGTTTTAGTAGAA
AAATCTGTTTCTCGTGATGTCCAAGAGTGCATCCTAGCAAAAGGAATGACACTGGTCTATGACATGAAGCTCCATCGACTAGAAAGAATTGCTCGCTGTA
CTGGTTCGCCAATTTTATTATCTGATGCTTTAATGAATCAGAAGTTAAAGCAATGTGATTCCTTTCATATTGAGAGATTTGTTGAGGAACATGTTGCGGT
ATGCGAAGGAGGAAAGAAGCCAAGGAAGACATTGATGTTCATCGAGGGCTGTCCAACATGTCTGGGATGTACAATTTTGTTGAAAGGAAGTCATAGTGAT
GAGTTGAAGAGGGTTAAATATGTGGTCCAATTTGCTGTAATCATGGCATATCACTTGATTCTTGAGACATCGTTTCTTGTTGATTGGAAGGCAATGTTCT
CTTCAGAAATATTTGGTGGAGTAGTTAATACCTCATCAATAGATCAACACTCTTCTGCTTTAGAAACTAGGATTCCTTGTGTTGAGGAGTCTACAACTGA
AAGTGGTTCATCTATCATTGATATTCCCATTTCTAATGGATTTCATGAAGAAGGTTCCCACAATATAAACATAGGATTAGAGGGATATGATCCTGCAGTT
TTTTCTGGATTTTCCTCTCTTTCAGCCTCTCTGAAGAAAGTTATGGGGGACAGCTTTCCTCTTGTCTCCTCTCCTCCTTATCGGTCCTTGTCTAATTACT
TTGGCTTCAATGGACAAGAAACTAATGGTCAAATCATGGAAGAGGTTCCAGTTTTAAAAACTTTGGAAGCTTTTGACCCTAGTGATATGGAAGGTAAAAA
GGATTCTGATGAAGAGAAGTCTGCCAATGATGGACAACCTCAATCTTTGTCACCTTACTCTGTAGCCACTCTGGACAGCGGAAATGATGTTGGAAATAAA
GAAGATCAAATCCAAAGTAAGGGTGATGCCAATGCAGTGTTGGATTCTCAGAGTATTTTGGTTTTGATGTCTAGACGGAATGCCTTGAGAGGGATTATAT
GTGAGCAAAGCCATTTTTCTCATATAATGTTCTACAGGAATTTTGATGTTCCCCTTGGAAAGTTTCTTCGGGATAATTTACTCAATCAGAGAAGCCAGTG
CAACACTTGCGGTGAGTTGCCTGAGGCTCACTTTTACTATTATGCTCATCATAATAAGCAGTTGACAATACGAGTTAAAAGGCTTTTCAAGACTTTGCCT
GGAGAAGGTGAAGGAAAACTTTGGATGTGGATTCGCTGTGGTAAATGTAAACATGAAAGCAGATTACCAAAATCTACTAAACGAGTCTTGATTTCAACTG
CTGCGCGTAGTCTGTCTTTCGGAAAATTCTTGGAGATAAGCTTTTCTCACCAATTTTCATCTGGTAGCTTGTTCAGCTGTGGCCATTCGCTTGAGAGAGA
CTTCCTCTACTTCTTTGGATTGGGTCCAATGGCAGCAATGTTTAAATACTCTCCAGTGACAACCTATAATGTGTCTCTCCCACCCCAGAAGCTGGAGTTC
TATCATTCAATCAGACTTGATGGCCTCAAGAAAGAATTCCATGCTGTTTATTCAAAAGGGATGCTGATCTTCAATGGGGTTGGTGAGGCGTTGAAGAATT
TAAGATCTCGATTTGCAGGGTCAGTTCTGAACCTTCAAGGTTCATTGAAAGAATTCTCTGATATTGAAGATATGTTGAAGCAGGAGAGTTCTGAGTTTGA
GTTAAACATTCAGAATGCAGTTGCTAAGAATGGTGATGAGGCTGTTTACAAGCTTCTTAGTTTGAATCAGTTATCATGGGAGCTTCTTCTTGAATCATGC
ATTTGGGAAAGACGCCTGCATTCATTGCTCTTGCCTGATACTTTGATGTTAGTAACCGGTGCCAGTAAGAAAGAATTGCAGGAACAGTTTGAGTCGCAGA
TGACTGACACTGCTGATGGAAAAATCCAGTGGAATGATAATACTTTGGGAAGCAGTGATGAAGTTTCTGACAACAGTGGCAATTTAAGGGACATGCTCAG
TACAACTGTCGAGGCAAGTGAATTTTCAATCAAAGAAATTCCAGTTGATGATCATGTTCATGAATTTAGGAAGCAGGATAATCTTTACACCTCATCTGCT
GTGGCTGAGGATATTGAGAGGTCAAGAGTGAGTGGTCTGAGCCAGAACAGATTTATCAACCAAGAACTATCTGTGAAACCTAGTGGCTCTGCCCACCAGC
ATTCTGATGATGGAAATTGCCAAGCAGACTATTTATCTGATGTACAAGTTGAAAGAACCATTCCAATTACTACAAGTATAGGGAGCAGTGATTCTTTTGT
TGATTCTGATTCAATTAAAAAGGGTACGTCTGCACGTTCTTTGGCATCCAGCTTAGAGAACTCAAATGGATGGTTCTGGATGCCATTTCCAGAAATCCGA
CAGATCTACATGAAGGATCTTCAGAGAGGTTTCATGCCAAAATTTCAGTCTATCAGTAGCAATATTCAGGAACACATGTCTGCAGCCCATCAGCTAATCA
CCAAGGAATGCCAGAGGCTGCACATCCCTCTTGGAACTGATAATTATATGGTGAAAGATTATGATGATGAACTCTCTAGCATAATTGCCTGTGCACTGGC
ATTTTTGAAAGGTCAACCTATTTCAACAGAGCTTTACAATGAGGATGATAGGAAAGAGGGTGGCATGTCTTTTAAATCAACTGATAGTTTAGACATACTG
ACTCGAATTCCTACAATGATCTCCCCACATTGGTCCTCTAATGGTTCTGATTCAGATTCTGTCCATTCTATGCTAAACATTTCTTCGGACGAGTCGCGCT
TGTCCAGCTTTGATGGGCTGAATTTGTTGGAATCACTTGTTCGTCCAGAAAATCTTAGCCCTGAAGTCGCTTTTGGGCGGTCAAAATCACTTGGAAAGGG
TAAATACTCAGTAATTTGTCTATACGCTAAGCAGTTCCATGATCTTCGGAATCGATGCTGTCCATCTGAACTTGATTATATCGCTTCCTTAAGTCGTTGT
AAGAATTGGGATGCAAAAGGTGGAAAGAGCAAATCCTTTTTTGCAAAGACACTTGATGACAGATTTATTATAAAGGAAATCAAGAAGACAGAATTTGAGT
CATTTGTGAAGTTTGCTCCACATTATTTCAAATACATGAACGAGTCATTTGAGTTAGGAAACCAAACTTGCCTTGCAAAAGTTCTGGGGATTTATCAGGT
GATCCTTAGACAGACAAAAAGCGGGAAAGAGATCAAGCATGATCTAATGGTCATGGAGAATCTTACCTTTGGTCGAAACATTACTCGCCAGTATGATCTT
AAGGGAGCTTTACATGCTAGATACAATTCAGCAGCTGATGGTTCAGGAGATGTTCTTTTGGATCAAAACTTTGTTGATGACATGAATTCCTCTCCACTGT
ATGTCAGTAATACAGCAAAGCGTCTCCTGGAACGGGCTGTTTGGAATGACACAACTTTTCTTAACTCAATCAATGTAATGGATTATTCTTTACTGGTCGG
AGTAGACACCCAGCGACGAGTGCTTGTGTGTGGGATTATTGATTATCTCAGGCAGTATACCTGGGACAAGCAGCTGGAAACATGGGTGAAGTCTTCCCTT
GTTCCTAAAAATCTGTTGCCAACTGTTATATCTCCTATAGAGTACAAAAAGAGGTTCAGAAAGTTCATGACTGCGCACTTCTTGAGTGTCCCGGATAACT
GGTGCTCACAGAGTTCCTCTAACCCTTGTGAACTTTGTGGCACCAGAGATGATGATCCATCCCAATCCACGTCCCGAAAACAAGGAGGGCAGAATGGGCT
TACTCATTAG
AA sequence
>Potri.019G087000.4 pacid=42774217 polypeptide=Potri.019G087000.4.p locus=Potri.019G087000 ID=Potri.019G087000.4.v4.1 annot-version=v4.1
MCSMCHYCGADRTKLKDEKKKLENGGCLKLNGEEPIWSCRLCQEKQEPDLMNRDGSSHSILPLISPATTLPSSDRFMSSCSDLYVDVNSHDWAHQEEEAA
RSAQKDLSYGMNDQLHNSRLEAPLNRVDGLLKATENNLKDSHNGTDRETVRDVEIVELLHGQEAKDNAFEKCVGSSNEGSDVSQISDDEVDAQVWEPPEA
EDPEDDLDGSVAFIDDDDDECGDGTEWGKPSSLSYSRDEGSRSFKFKEEKQKAMDEVVNVKFKAVVSQLLKTAGVASLMRDGESWVDIVTYLSWEAASFL
KPEAIDRKAMDPDGYVKVKCIATGSRSESEVVKGLVFKKRAAHKHMPTKYKNPRLLLIQGVLGQSSSGLSSFKSMEQEKDNLRALIETIEMCHPNVVLVE
KSVSRDVQECILAKGMTLVYDMKLHRLERIARCTGSPILLSDALMNQKLKQCDSFHIERFVEEHVAVCEGGKKPRKTLMFIEGCPTCLGCTILLKGSHSD
ELKRVKYVVQFAVIMAYHLILETSFLVDWKAMFSSEIFGGVVNTSSIDQHSSALETRIPCVEESTTESGSSIIDIPISNGFHEEGSHNINIGLEGYDPAV
FSGFSSLSASLKKVMGDSFPLVSSPPYRSLSNYFGFNGQETNGQIMEEVPVLKTLEAFDPSDMEGKKDSDEEKSANDGQPQSLSPYSVATLDSGNDVGNK
EDQIQSKGDANAVLDSQSILVLMSRRNALRGIICEQSHFSHIMFYRNFDVPLGKFLRDNLLNQRSQCNTCGELPEAHFYYYAHHNKQLTIRVKRLFKTLP
GEGEGKLWMWIRCGKCKHESRLPKSTKRVLISTAARSLSFGKFLEISFSHQFSSGSLFSCGHSLERDFLYFFGLGPMAAMFKYSPVTTYNVSLPPQKLEF
YHSIRLDGLKKEFHAVYSKGMLIFNGVGEALKNLRSRFAGSVLNLQGSLKEFSDIEDMLKQESSEFELNIQNAVAKNGDEAVYKLLSLNQLSWELLLESC
IWERRLHSLLLPDTLMLVTGASKKELQEQFESQMTDTADGKIQWNDNTLGSSDEVSDNSGNLRDMLSTTVEASEFSIKEIPVDDHVHEFRKQDNLYTSSA
VAEDIERSRVSGLSQNRFINQELSVKPSGSAHQHSDDGNCQADYLSDVQVERTIPITTSIGSSDSFVDSDSIKKGTSARSLASSLENSNGWFWMPFPEIR
QIYMKDLQRGFMPKFQSISSNIQEHMSAAHQLITKECQRLHIPLGTDNYMVKDYDDELSSIIACALAFLKGQPISTELYNEDDRKEGGMSFKSTDSLDIL
TRIPTMISPHWSSNGSDSDSVHSMLNISSDESRLSSFDGLNLLESLVRPENLSPEVAFGRSKSLGKGKYSVICLYAKQFHDLRNRCCPSELDYIASLSRC
KNWDAKGGKSKSFFAKTLDDRFIIKEIKKTEFESFVKFAPHYFKYMNESFELGNQTCLAKVLGIYQVILRQTKSGKEIKHDLMVMENLTFGRNITRQYDL
KGALHARYNSAADGSGDVLLDQNFVDDMNSSPLYVSNTAKRLLERAVWNDTTFLNSINVMDYSLLVGVDTQRRVLVCGIIDYLRQYTWDKQLETWVKSSL
VPKNLLPTVISPIEYKKRFRKFMTAHFLSVPDNWCSQSSSNPCELCGTRDDDPSQSTSRKQGGQNGLTH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G34260 FAB1D FORMS APLOID AND BINUCLEATE CE... Potri.019G087000 0 1
AT1G71010 FAB1C FORMS APLOID AND BINUCLEATE CE... Potri.008G128800 1.41 0.8492
AT4G14220 RHF1A RING-H2 group F1A (.1) Potri.010G092300 2.82 0.8018
AT1G08760 Plant protein of unknown funct... Potri.007G131600 3.00 0.7867
AT5G65170 VQ motif-containing protein (.... Potri.005G166100 4.00 0.7558
AT3G07650 CO COL9 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500 5.29 0.7562
AT3G46450 SEC14 cytosolic factor family ... Potri.001G237400 5.74 0.7400
AT2G42010 PLDBETA1 phospholipase D beta 1 (.1) Potri.014G074700 8.00 0.7761
AT4G00080 UNE11 unfertilized embryo sac 11, Pl... Potri.002G145800 8.24 0.7220
AT1G30760 FAD-binding Berberine family p... Potri.011G158700 8.48 0.7546
AT1G03060 SPI SPIRRIG, Beige/BEACH domain ;W... Potri.005G215400 9.48 0.7609

Potri.019G087000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.