Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71840 515 / 0 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 120 / 6e-31 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 116 / 3e-29 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 108 / 6e-26 WD-40 repeat family protein / notchless protein, putative (.1) AT2G43770 105 / 3e-25 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 104 / 5e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 100 / 8e-23 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G15980 99 / 2e-22 Coatomer, beta' subunit (.1.2.3.4.5) AT1G61210 99 / 6e-22 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 98 / 6e-22 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116900 [exp] 611 / 0 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 127 / 9e-34 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 119 / 2e-30 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 109 / 5e-27 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 110 / 3e-26 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.010G255400 [exp] 110 / 5e-26 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 107 / 5e-26 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 109 / 1e-25 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 100 / 1e-22 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031629 [exp] 488 / 7e-173 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10033710 [exp] 494 / 5e-169 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10032994 [exp] 403 / 4e-140 AT1G71840 415 / 8e-145 transducin family protein / WD-40 repeat family protein (.1) Lus10014674 [exp] 123 / 6e-32 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 122 / 2e-31 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 115 / 7e-29 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 115 / 4e-28 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10003487 [exp] 112 / 8e-28 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 114 / 9e-28 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10041007 [exp] 109 / 9e-26 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.019G087200.1 pacid=42774412 polypeptide=Potri.019G087200.1.p locus=Potri.019G087200 ID=Potri.019G087200.1.v4.1 annot-version=v4.1 ATGAATGGTCCAAATCGATCATTACACGACGAAGAAGAAGACGATCAAGGCGAAGTTTTCCTTGACGATTCCGATATCATCGACGAAGTCGCCGTTGATG AAGAAGATCTTCCTGATGCGGACGAGGATGACGACGACGACGACACGGATGATTCTATGCACATATTTACCGGCCATACCGGTGAGCTCTATACAGTATC CTGCAGTCCAACAGATCCTTTATTAGTGGCGACCGGTGGAGGAGACGACAAAGGGTTTCTTTGGAAGATTGGTCTTGGAGATTGGGCATCTGAGCTCAAA GGTCATAAGGACTCCGTGTCTTGTTTAGCCTTTAGTAGTGATGGACAGTTGCTTGCATCTGGAGGGTTTGATGGTCTTGTTCAAATTTGGGATGCTTCAT CGGGAAACCATAAATGTGTACTTGAAGGTCCTGATGAGGGCATTGAGTGGGTCAGATGGCATCCAAAAGGGCATTTGGTGTTGGCAGGTTCTGAGGACAA AAGTGTCTGGATGTGGAATGCTGACAGAGGTGCCTATCTTAATTCATTTACAGGACATGAAGCAAGTGTTACCTGTGGTGATTTTACCCCTGATGGTAAA ACAATCTGTACTGGTTCTGATGATGCATCCCTGAGGATATGGAATCCAAAAAGTGGCGAAAACATACATGTTGTGAGAGGTCATCCATACCACACTGATG GACTGACATGCTTGGCATTGAGCTCAGATTCAACTCTAGCTATTACTGGTTCAAAGGATAATTCTGTCCACATTGTGAACATAACTTCGGGCAGGGTGGT TAGTTCTCTTGCTTCTCACTCTGATTCTGTTGAATGTGTTGAGCTTGCACCAAGCTCCCCTTGGGCTGCTACGGGAGGCTTGGATCAAAAACTTATCATC TGGGATCTGCAGCATTCATTGCCCCGTGCTACATGTGAACACCAGGATGGAGTTACATGCGTGGCATGGCTTGGTGCATCTAGATACGTTGCTACAGGGT GTGTGGACGGGAAAGTGAGACTATGGGATAGTCTCTCTGGTGATTGCATAAGAACATTCAGTGGCCATGCTGACGCCATTCAATCTCTATCTCTATCTGC TAATCAAGATTACCTTGTCTCGGGTTCAAGCGATGGAACAGCAAGAGTGTTTGAGATTGCAGAGTTCAAGTAA
AA sequence Show only first row Show all	>Potri.019G087200.1 pacid=42774412 polypeptide=Potri.019G087200.1.p locus=Potri.019G087200 ID=Potri.019G087200.1.v4.1 annot-version=v4.1 MNGPNRSLHDEEEDDQGEVFLDDSDIIDEVAVDEEDLPDADEDDDDDDTDDSMHIFTGHTGELYTVSCSPTDPLLVATGGGDDKGFLWKIGLGDWASELK GHKDSVSCLAFSSDGQLLASGGFDGLVQIWDASSGNHKCVLEGPDEGIEWVRWHPKGHLVLAGSEDKSVWMWNADRGAYLNSFTGHEASVTCGDFTPDGK TICTGSDDASLRIWNPKSGENIHVVRGHPYHTDGLTCLALSSDSTLAITGSKDNSVHIVNITSGRVVSSLASHSDSVECVELAPSSPWAATGGLDQKLII WDLQHSLPRATCEHQDGVTCVAWLGASRYVATGCVDGKVRLWDSLSGDCIRTFSGHADAIQSLSLSANQDYLVSGSSDGTARVFEIAEFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71840			transducin family protein / WD...		Potri.019G087200 [exp]	0	1
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Potri.002G176000 [exp]	1.41	0.8348
AT5G22790		RER1	reticulata-related 1 (.1)		Potri.009G150400 [exp]	2.00	0.8332
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	15.87	0.7763	Pt-HDA9.2,HDA904
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Potri.008G056600 [exp]	19.89	0.8069	Pt-SCL30.2
AT1G67170			unknown protein		Potri.017G109700 [exp]	25.92	0.7755
AT5G19830			Peptidyl-tRNA hydrolase family...		Potri.001G005000 [exp]	29.08	0.7720
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	30.62	0.7828
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	31.12	0.7719
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	37.14	0.7715
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.014G061400 [exp]	44.39	0.7635

Compare expression of checked genes

Potri.019G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.