Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09650 227 / 6e-75 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G117000 [exp] 335 / 4e-117 AT4G09650 247 / 8e-83 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Potri.014G102100 [exp] 75 / 8e-16 AT4G09650 90 / 3e-21 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012452 [exp] 217 / 1e-70 AT4G09650 250 / 5e-84 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1) Lus10020508 [exp] 216 / 2e-70 AT4G09650 248 / 5e-83 PIGMENT DEFECTIVE 332, ATP synthase delta-subunit gene (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [poplar] [flax] ATP_synthase PF00213 [poplar] [flax] OSCP ATP synthase delta (OSCP) subunit
Representative CDS sequence Show only first row Show all	>Potri.019G087300.1 pacid=42773467 polypeptide=Potri.019G087300.1.p locus=Potri.019G087300 ID=Potri.019G087300.1.v4.1 annot-version=v4.1 ATGGCATCAGCACTCCAAAACGCCACCGCTTCACTCCAATCCAAAACCCCACCATCAGCTAGACTCCCAACCAACTTCACCTCCCCAAAGCCCCTCAACC TCTCCTTCTCCGCCACTTTCCCATCCCTCAACCTCTCCACCACCGCAACCACTACAAACCGCCGCCGGGGTGGCTCGGCCCTGGGGACCAAAATGTCAGC AACAGCAGCAGGAAGTTACGCATCAGCACTAGCTGACGTGGCAATATCCAACAACACATTAGACGCAACGGCGTCCGACATCGACAAAATAGAAAGGCTG TTTTCAAACCCAGCAGCGAATGACTTCTTTACTAACCCAACAATAGACTTAGAAAAGAAACGGCAAGTCGTTGATGAGTTCGCCAAGTCGTCTGCTCTCC AACCCCTCACGGCAAACTTCATTAACATCCTTATAGATTCCAAAAGGGTTGATCTGGTTAAAGATATAGTGGTGGAATTCGAGAAGGTTTACAATAAGCT GACAGACACACAGCTTGCTGTGGTGAGTTCAGTTGTGGCTTTGGAGTCACAGCATTTGGCCCAGATAGCAAAACAAGTGCAGAAATTGACTGGAGCTAAG AATGTAAGGATTAAGACTGTGATTGACCCAAGTTTGGTTGCTGGGTTTACTGTAAGGTATGGGAGCTCAGGGTCTAAGATGATTGATATGAGTGTGAAGA AACAGTTGGAGGAGATTACTGCTCAGCTTGACTTGAGTGATATTGAACTGGCTGCTTGA
AA sequence Show only first row Show all	>Potri.019G087300.1 pacid=42773467 polypeptide=Potri.019G087300.1.p locus=Potri.019G087300 ID=Potri.019G087300.1.v4.1 annot-version=v4.1 MASALQNATASLQSKTPPSARLPTNFTSPKPLNLSFSATFPSLNLSTTATTTNRRRGGSALGTKMSATAAGSYASALADVAISNNTLDATASDIDKIERL FSNPAANDFFTNPTIDLEKKRQVVDEFAKSSALQPLTANFINILIDSKRVDLVKDIVVEFEKVYNKLTDTQLAVVSSVVALESQHLAQIAKQVQKLTGAK NVRIKTVIDPSLVAGFTVRYGSSGSKMIDMSVKKQLEEITAQLDLSDIELAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Potri.019G087300 [exp]	0	1
AT1G31330		PSAF	photosystem I subunit F (.1)		Potri.001G081500 [exp]	1.41	0.9878
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	1.73	0.9879	Lhca6,Pt-LHCA2*1.1
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.010G210200 [exp]	3.00	0.9846
AT3G47860		CHL	chloroplastic lipocalin (.1)		Potri.001G420800 [exp]	4.69	0.9750
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Potri.002G253800 [exp]	5.91	0.9815	PSAE1.1
AT4G01150			unknown protein		Potri.014G093900 [exp]	8.00	0.9777	CAM2.1
AT4G01150			unknown protein		Potri.002G166800 [exp]	8.36	0.9761	CAM2.2
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Potri.006G221100 [exp]	8.48	0.9775
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.014G175600 [exp]	8.77	0.9803	PSAL.2
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.004G014850 [exp]	9.48	0.9803

Compare expression of checked genes

Potri.019G087300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.