Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SERK2.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34210 1012 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G71830 1003 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 866 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 612 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 574 / 0 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT3G25560 568 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G60800 561 / 0 NIK3 NSP-interacting kinase 3 (.1) AT5G45780 485 / 5e-165 Leucine-rich repeat protein kinase family protein (.1) AT5G65240 479 / 1e-162 Leucine-rich repeat protein kinase family protein (.1.2) AT5G10290 475 / 4e-161 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G117200 [exp] 1066 / 0 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 993 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 989 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.001G206700 [exp] 901 / 0 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.003G023000 [exp] 895 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.004G108200 [exp] 595 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G188800 [exp] 587 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.010G134100 [exp] 585 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G043200 [exp] 584 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006057 [exp] 935 / 0 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 931 / 0 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10020962 [exp] 895 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10006056 [exp] 724 / 0 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028715 [exp] 708 / 0 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10030898 [exp] 579 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 565 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10023146 [exp] 486 / 5e-168 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000629 [exp] 484 / 8e-165 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10025358 [exp] 470 / 6e-164 AT4G33430 500 / 2e-176 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G087700.1 pacid=42773137 polypeptide=Potri.019G087700.1.p locus=Potri.019G087700 ID=Potri.019G087700.1.v4.1 annot-version=v4.1 ATGGAGAGGAAAGTTGGGGACCTTCTGTTTTTGTGGTTGTTGATCTTGGTGTTGCTGCTGCATCCAGTATGGCTGGTTCTGGGTAACATGGAAGGTGATG CTTTGCATAGCCTCAGGAGCAACTTGAATGATCCAAACAATGTCCTGCAGAGTTGGGATCCTACCCTTGTCAACCCTTGCACATGGTTTCATGTCACATG TAACAATGATAATAGTGTCATACGAGTTGATCTTGGAAATGCTGCTTTATCTGGTCAGCTTGTTCCACAGCTTGGCCTACTTAAGAATTTGCAATACTTG GAACTCTATAGTAACAATATAAGCGGACCAATTCCTAGTGATCTGGGAAATTTGACTAACCTGGTGAGCTTGGATCTTTACTTGAATAGTTTTACTGGTC CCATCCCGGACACTTTGGGCAAGCTGTCAAAACTGCGATTCCTTCGGCTTAATAACAATAGTTTGGCGGGGCCCATTCCAATGTCATTGACTAATATCTC AGCACTTCAAGTACTGGATCTTTCAAACAACCGCCTCTCTGGAGTGGTTCCAGATAATGGTTCCTTCTCACTGTTCACTCCCATCAGTTTTGCTAACAAC TTGGATCTCTGTGGACCGGTTACTGGTCATCCCTGCCCAGGTTCTCCTCCTTTTTCTCCTCCTCCTCCATTTGTCCCACCGCCTCCAGTTTCTACACCAG GAGGTAATAGTGCCACTGGAGCAATTGCTGGAGGAGTTGCGGCTGGTGCAGCCTTACTGTTTGCTGCCCCTGCATTAGCATTTGCTTGGTGGCGTCGGAG GAAGCCTCAGGAATTCTTCTTTGATGTTCCTGCTGAAGAAGATCCCGAGGTTCATCTAGGACAGCTTAAGAGGTTTTCACTGCGAGAATTACAAGTTGCA ACAGATAGCTTTAGCAACAAAAATATTCTGGGTAGAGGAGGATTTGGGAAGGTTTACAAAGGACGTCTAGCAGATGGCTCATTGGTGGCTGTAAAAAGAC TTAAAGAAGAGCGTACACCTGGAGGAGAGTTGCAGTTTCAAACGGAAGTTGAGATGATAAGCATGGCTGTGCATCGGAATCTCCTCCGCTTACGTGGCTT TTGCATGACACCAACTGAAAGACTGCTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCATCATGTTTGAGGGAACGCCCACCGTCACAACCTCCTCTA GATTGGCCAACACGGAAGCGAATTGCATTGGGATCTGCAAGGGGTTTATCTTATTTGCATGATCATTGTGATCCAAAGATTATTCATCGGGATGTTAAAG CTGCAAATATTTTGTTGGATGAGGAATTTGAGGCTGTTGTTGGGGATTTTGGGCTAGCAAAATTGATGGACTACAAGGATACTCACGTCACCACTGCTGT CCGTGGTACAATAGGGCACATAGCTCCAGAGTACCTATCTACTGGTAAATCGTCCGAGAAAACTGATGTTTTTGGTTATGGAATCATGCTTCTGGAGCTA ATTACTGGACAGAGGGCCTTTGACCTTGCTAGGTTGGCAAATGATGATGATGTCATGTTGCTTGATTGGGTAAAAGGACTTCTTAAGGAGAAGAAGTTAG AAATGCTAGTAGATCCTGATCTCCAAAACAAATATGTGGAAGCAGAGGTGGAGCAACTAATCCAGGTTGCACTGCTTTGTACGCAAGGCACCCCGATGGA GCGGCCTAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGTGATGGTTTAGCAGAGAGATGGGATGAGTGGCAAAAGGTAGAAGTTCTTCGTCAGGAGGTG GAATTCTCCCCTCATCCAAATTCTGATTGGATTGTTGACTCGACAGAAAATCTACACGCGGTTGAGTTATCTGGTCCAAGGTGA
AA sequence Show only first row Show all	>Potri.019G087700.1 pacid=42773137 polypeptide=Potri.019G087700.1.p locus=Potri.019G087700 ID=Potri.019G087700.1.v4.1 annot-version=v4.1 MERKVGDLLFLWLLILVLLLHPVWLVLGNMEGDALHSLRSNLNDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGLLKNLQYL ELYSNNISGPIPSDLGNLTNLVSLDLYLNSFTGPIPDTLGKLSKLRFLRLNNNSLAGPIPMSLTNISALQVLDLSNNRLSGVVPDNGSFSLFTPISFANN LDLCGPVTGHPCPGSPPFSPPPPFVPPPPVSTPGGNSATGAIAGGVAAGAALLFAAPALAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVA TDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPL DWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLEL ITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNKYVEAEVEQLIQVALLCTQGTPMERPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEV EFSPHPNSDWIVDSTENLHAVELSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.019G087700 [exp]	0	1	Pt-SERK2.3
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.013G117200 [exp]	1.00	0.8579	Pt-SERK2.2
AT1G01880			5'-3' exonuclease family prote...		Potri.014G077300 [exp]	1.41	0.8393
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	4.58	0.8301
AT5G16720			Protein of unknown function, D...		Potri.004G087600 [exp]	5.00	0.8058
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.006G114300 [exp]	12.32	0.8272
AT1G76660			unknown protein		Potri.005G260000 [exp]	17.94	0.7667
AT4G11450			Protein of unknown function (D...		Potri.001G104200 [exp]	18.00	0.7956
AT1G47840		HXK3	hexokinase 3 (.1)		Potri.005G238600 [exp]	21.00	0.7683
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.016G119800 [exp]	21.63	0.7546
AT1G08350			Endomembrane protein 70 protei...		Potri.004G203200 [exp]	27.34	0.7672

Compare expression of checked genes

Potri.019G087700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.