Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG907,SUVH3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04940 186 / 7e-54 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 181 / 5e-52 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT1G17770 98 / 1e-22 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 96 / 8e-22 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT4G13460 70 / 3e-13 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 62 / 2e-10 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT5G47150 54 / 5e-08 YDG/SRA domain-containing protein (.1) AT2G35160 52 / 4e-07 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 50 / 1e-06 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G47160 49 / 2e-06 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036800 [exp] 482 / 3e-168 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 415 / 6e-142 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 176 / 2e-50 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 167 / 3e-47 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.010G064300 [exp] 72 / 7e-14 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.008G173100 [exp] 70 / 3e-13 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.003G083100 [exp] 60 / 1e-09 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.012G115500 [exp] 43 / 0.0002 AT2G35160 172 / 3e-46 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.002G237950 [exp] 42 / 0.0004 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029470 [exp] 204 / 2e-60 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 201 / 1e-59 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 198 / 2e-58 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008680 [exp] 76 / 4e-15 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Lus10014457 [exp] 71 / 2e-13 AT2G33290 444 / 2e-149 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) Lus10023714 [exp] 71 / 3e-13 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10011049 [exp] 50 / 2e-06 AT2G22740 255 / 4e-75 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) Lus10003017 [exp] 50 / 2e-06 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10032528 [exp] 50 / 2e-06 AT2G35160 218 / 2e-63 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10035115 [exp] 47 / 1e-05 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Potri.019G087900.1 pacid=42773775 polypeptide=Potri.019G087900.1.p locus=Potri.019G087900 ID=Potri.019G087900.1.v4.1 annot-version=v4.1 ATGGTAATGGAAGGAGGTGGATCAGGTAATAATTCAACACCTATAATTGATAAGACAAGAGTTTTGGATGTGGAACCACTGCGTACTTTAGTACCGGTGT TTCCTTCTAGTTCCAAAGCACCACCTTTTGGGCCCTACTCATCTGGGTTTGCACCATTTTATCCTTTTAGTGCACCACAGGGTTCACAAGCAACACCTGA CCTTAACCAACAGACACACACCACTCCTGCAGCTCCCCTTCGCTCGTTTAGAGCTACAGAGTCCAACGGGGATGCTTTTGATGGAGAATATGAGTCCTAT GATGGTAGCACGGGCTCAGCTAAGCGGAGACCCAAGTCTTCTTCGCAGAAAAGAGCGAGGAAGATTCAAGATTTGGATTTTACCTTGTCTGTTGATGAGA ATAATTTTGTTGTAGGAGTTAGTTTGTCTGAAAGGGATGATGGTAACAGGGAAGTAGTTCATAGTATACAAATGAGGTTCGATGCACTTAGGAGAAGGCT TAGTCAATTAGAAGATGCTAAGGAATCGCCTGCTGGGATTATTAGGCGGGCGGATCTGAAAGCAGGGAATATTTTGATGACTAAACAGGTGCGAACAAAT ATGAGGAAGAGAATTGGAACAGTTCCTGGAGTTGAGATTGGCGATATTTTCTTTTTCCGAATGGAAATGTGCTTACTGGGATTGCATGCTCCATCCATGG AAATTTTGCAATATTTACTGATGGAATTATGGAGTAACCTAGCAGAAGCAGCAGCAGAAGCAGAAGCCTCTTCATTTTTCCGCAAGGGAGCTTTATCATT GCCTACTGAAACTTTGCGTGTCGCCAGAATTTGTAATGACTTACTCAGTATTGTTAAAAATCTATCTATTATCCAGAATTGCTCTTAG
AA sequence Show only first row Show all	>Potri.019G087900.1 pacid=42773775 polypeptide=Potri.019G087900.1.p locus=Potri.019G087900 ID=Potri.019G087900.1.v4.1 annot-version=v4.1 MVMEGGGSGNNSTPIIDKTRVLDVEPLRTLVPVFPSSSKAPPFGPYSSGFAPFYPFSAPQGSQATPDLNQQTHTTPAAPLRSFRATESNGDAFDGEYESY DGSTGSAKRRPKSSSQKRARKIQDLDFTLSVDENNFVVGVSLSERDDGNREVVHSIQMRFDALRRRLSQLEDAKESPAGIIRRADLKAGNILMTKQVRTN MRKRIGTVPGVEIGDIFFFRMEMCLLGLHAPSMEILQYLLMELWSNLAEAAAEAEASSFFRKGALSLPTETLRVARICNDLLSIVKNLSIIQNCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	0	1	SDG907,SUVH3.1
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	1.00	0.9161	SUVH3.4,SDG950
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	2.00	0.9065
AT2G24530			unknown protein		Potri.003G187400 [exp]	3.31	0.8621
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.012G073700 [exp]	4.89	0.8764	CCSPK5.3
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.007G097100 [exp]	5.65	0.8697
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Potri.009G105600 [exp]	5.91	0.8774
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	6.92	0.8779
AT4G20325			unknown protein		Potri.006G280600 [exp]	8.12	0.8840
AT5G01720			RNI-like superfamily protein (...		Potri.006G105400 [exp]	10.39	0.8661
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.006G239100 [exp]	11.53	0.8475

Compare expression of checked genes

Potri.019G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.