Plant FIBer expression Database

Potri.019G088100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71820 1346 / 0 SEC6 SEC6 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G117400
[exp]
1417 / 0 AT1G71820 1345 / 0.0 SEC6 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026982
[exp]
1309 / 0 AT1G71820 1331 / 0.0 SEC6 (.1.2)
Lus10020177
[exp]
1233 / 0 AT1G71820 1257 / 0.0 SEC6 (.1.2)
Lus10041100
[exp]
1200 / 0 AT1G71820 1221 / 0.0 SEC6 (.1.2)
Lus10036425
[exp]
126 / 2e-33 AT1G71820 123 / 5e-33 SEC6 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF06046 Sec6 Exocyst complex component Sec6
Representative CDS sequence
>Potri.019G088100.4 pacid=42774420 polypeptide=Potri.019G088100.4.p locus=Potri.019G088100 ID=Potri.019G088100.4.v4.1 annot-version=v4.1
ATGATGGCGGAGGATCTCGGCATCGAAGCGAAAGAAACCGCCGTGCGTGAGGTGGCGAAACTGTTACCGCTTCCAGAGCTTCTTCAATCTATTGCTTCTA
TCAAAGCCGATTACATCGCTCGCCAACAAGCTAATGATGCGCAACTTAGTACAATGGTAGCAGAGCAGGTGGAACAAGCACAATCTGGATTGGAATCGTT
GGCCTTGTCTCAGAAGACGATCAGTCAGCTACGAGAGAACTTCATTTCTATTGAAAAGTTATGTCAAGAATGTCAAACTTTGATCGAGAATCATGATCAG
ATAAAGCTACTTAGCAATGCAAGGAATAATCTTAATACTACGCTGAAGGATGTCGAAGGTATGATGTCAATATCTGTTGAAGCAGCAGAGGCACGAGATT
CATTGAGTGATGATAGAGAAATTGTTAATACTTATGAGAGGTTAACTGCACTTGATGGGAAGCGAAGATTTGCATTAGCAGCTGCTGGATCTCACAAAGA
GGAGGTTGGCAGATTAAGAGAATATTTTGAAGATGTAGATCAGACATGGGAAACCTTTGAAAAGACTTTATGGGGACACGTTTCCAACTTCTTTAAGCTT
TCTAAAGAAAGCCCACAAACGCTGGTTCGTGCTTTAAGGGTTGTGGAAATGCAAGAAATTCTTGATGAACAAGTTGCTGAGGAGGCAGCTGAGGCTGAGG
GAGGTGGTGCAATGGCAACAGTTGCAAATCCTCGCAGATCTGCCAAAAAATCTACCACCACAGCAGTTTCTTCCAAAAACCCCATGCAACAGAAGTTGAA
GATTCAGGGTAAAGGGTTTAAGGATAAATGTTACGAGAGTATAAGAAAGGCAGTTGAAGGACGGTTTAACAAGCTACTGACAGAGCTTGTATTTGAAGAC
CTCAAAGCTGCCTTAGAAGAAGCACGAACAATCGGTGAAGAGCTTGGTGATATATATGACTATGTGGCCCCATGTTTTCCCCCACGATATGAAATATTCC
AACTCATGGTAAACCTTTATACAGAGAGGTTTACTCAGATGCTCAGATTGTTGAGCGACAGGGCAAATGAGTTATCAAATATAGAGATTTTAAAGGTAAC
TGGTTGGGTAGTTGAATATCAAGATAATTTGGTTGGACTCGGTGTTGATGAGTCACTTGCTCAAGTTTGTTCTGAGAGTGGAGCCATGGATCCCCTCATG
AATTCATATGTTGAGAGAATGCAAGCTACAACAAGGAAATGGTACTTGAATATCCTAGAAGCTGATAAGGTACAGCCACCAAAGAAAACAGATGATGGAA
AGCTATATACTCCAGCTGCTGTTGATCTGTTTAGGATCCTTGGGGAGCAAGTTCAGATTGTTAGGGATAATAGCACAGATGTCATGCTATACAGGATCTC
GTTGGCTATAATTCAGGTGATGATAGATTTTCAAGCTGCTGAAAGGAAGAGGCTTGAGGAACCTGCTTCAGAAATTGGTCTGGAACCTTTATGCGCAATG
GTTTGTGTACTTTTGTATATGTGTTTTATGCAAGTAATTTTTCATGTTTGGGTGTTAAATTCTATTTTGTTAGCTACTTGTTTTTTCTATGAAAATAACA
AACAGATAAATAACAATCTGCGCTGCTATGACCTTGCTATGGAGTTGAGTAACAGCACCATGGAAGCCCTACCACAAAACTATGCTGAGCAGGTTAACTT
TGAAGATACTTGCAAAGGTTTCCTAGAGGTTGCAAAGGAAGCTGTACATCAAACTGTTAGGGTTATCTTTGAAGATCCTGGTGTGCAGGAGTTAATTGTC
AAGCTTTATCATAAAGAGTGGTCTGAAGGACAGGTCACGGAGTACCTAGTTGCTACATTTGGTGATTATTTTACAGATGTAAAGATGTATATTGAAGAAA
GATCATTTAGGAGGTTTGTTGAAGCTTGTCTTGAGGAAACAATGGTGGTTTACGTTGATCACCTTCTGACTCAGAGAAACTACATAAAGGAAGAGACAAT
AGAACGGATGAGGCTAGATGAAGAGGTTATTATGGACTTCTTCAGGGAGTATATCACAGTGTCTAAAGTAGAAAGTAGAGTCCGGATACTGAGTGATTTG
AGAGAACTTGCTTCAGCAGAGAGTTTGGATTCCTTCACACTCATCTATACAAATATTCTCGAACATCAACCCGACTGCCCACCTGAAGTTGTTGAAAAGC
TTGTTGGACTGCGAGAAGGCATACCACGGAAGGATGCAAAAGAGGTTATGCAAGAGTGCAAAGAGATATATGAGAATTCACTTGTTGATGGAAACCCCGC
AAAGGCTGGTTTTCTTTTTCCGAAGGTGAAGTGTTTGACAGCTTCCAAAGGATCTCTCTGGCGAAAGCTCACTTAG
AA sequence
>Potri.019G088100.4 pacid=42774420 polypeptide=Potri.019G088100.4.p locus=Potri.019G088100 ID=Potri.019G088100.4.v4.1 annot-version=v4.1
MMAEDLGIEAKETAVREVAKLLPLPELLQSIASIKADYIARQQANDAQLSTMVAEQVEQAQSGLESLALSQKTISQLRENFISIEKLCQECQTLIENHDQ
IKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLSDDREIVNTYERLTALDGKRRFALAAAGSHKEEVGRLREYFEDVDQTWETFEKTLWGHVSNFFKL
SKESPQTLVRALRVVEMQEILDEQVAEEAAEAEGGGAMATVANPRRSAKKSTTTAVSSKNPMQQKLKIQGKGFKDKCYESIRKAVEGRFNKLLTELVFED
LKAALEEARTIGEELGDIYDYVAPCFPPRYEIFQLMVNLYTERFTQMLRLLSDRANELSNIEILKVTGWVVEYQDNLVGLGVDESLAQVCSESGAMDPLM
NSYVERMQATTRKWYLNILEADKVQPPKKTDDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRISLAIIQVMIDFQAAERKRLEEPASEIGLEPLCAM
VCVLLYMCFMQVIFHVWVLNSILLATCFFYENNKQINNNLRCYDLAMELSNSTMEALPQNYAEQVNFEDTCKGFLEVAKEAVHQTVRVIFEDPGVQELIV
KLYHKEWSEGQVTEYLVATFGDYFTDVKMYIEERSFRRFVEACLEETMVVYVDHLLTQRNYIKEETIERMRLDEEVIMDFFREYITVSKVESRVRILSDL
RELASAESLDSFTLIYTNILEHQPDCPPEVVEKLVGLREGIPRKDAKEVMQECKEIYENSLVDGNPAKAGFLFPKVKCLTASKGSLWRKLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71820 SEC6 SEC6 (.1.2) Potri.019G088100
[exp]
0 1
AT2G31870 PARG1, TEJ Sanskrit for 'bright', poly\(A... Potri.007G145800
[exp]
2.44 0.8501 TEJ.1
AT3G54860 ATVPS33 VACUOLAR PROTEIN SORTING 33, S... Potri.008G035600
[exp]
6.63 0.8746 Pt-VPS33.2
AT5G04420 Galactose oxidase/kelch repeat... Potri.008G031200
[exp]
9.89 0.8373
AT3G52120 SWAP (Suppressor-of-White-APri... Potri.009G064600
[exp]
10.19 0.8735
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Potri.010G049100
[exp]
12.64 0.8500
AT3G11130 Clathrin, heavy chain (.1) Potri.008G070600
[exp]
13.85 0.8264
AT2G36360 Galactose oxidase/kelch repeat... Potri.008G024700
[exp]
16.73 0.8299
AT3G15220 Protein kinase superfamily pro... Potri.001G397600
[exp]
20.49 0.8400
AT3G09320 DHHC-type zinc finger family p... Potri.006G087400
[exp]
22.27 0.7847
AT5G02410 ALG10 homolog of yeast ALG10, DIE2/A... Potri.006G084800
[exp]
23.10 0.7478

Potri.019G088100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.