Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68810 122 / 1e-32 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 115 / 3e-30 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT3G56770 107 / 7e-28 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G41130 102 / 4e-26 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G40200 100 / 4e-25 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 69 / 6e-13 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 61 / 1e-10 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 61 / 1e-10 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G12860 60 / 4e-10 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 58 / 2e-09 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G117600 [exp] 426 / 2e-152 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G055700 [exp] 211 / 9e-68 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G065500 [exp] 197 / 3e-63 AT1G68810 113 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 129 / 3e-36 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 130 / 1e-35 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 129 / 4e-35 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 125 / 5e-35 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 118 / 7e-32 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 118 / 8e-32 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038306 [exp] 282 / 8e-96 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10036175 [exp] 195 / 1e-62 AT3G25710 75 / 3e-16 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10013917 [exp] 186 / 6e-58 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 172 / 9e-53 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 122 / 4e-33 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 122 / 1e-32 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 121 / 2e-32 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10035056 [exp] 122 / 3e-32 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 119 / 3e-32 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 120 / 2e-31 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G089000.1 pacid=42773548 polypeptide=Potri.019G089000.1.p locus=Potri.019G089000 ID=Potri.019G089000.1.v4.1 annot-version=v4.1 ATGGAACCTTGTTCTTGGAACTCAACAAGGGTGCAAGCCTCTGATTTTGAAGGAATGAGTGATGGGTTTTTGGTGAATACTGGTTTACAAGCCAAAACAA GAACTGGGCCATCTTCAACTTCCTCTTTGGTTTTGGATAATGAAAGGGGAGAGCTTGTGGAGGCTACTGTGAGAATGGAGAGGAAAGGGGTGGCGGCTGA GAGAAGCATTGCCGCTTTAAAGAATCATAGTGAAGCTGAGAAGAAGCGTAGAGCGAGGATTAATGCACATCTTGACACACTTAGGAGCCTAGTACCTGGT ACTAGGAAGATGGACAAGGCATCGTTGCTTGCTGAAGTTATAGCTCACCTAAAGGAGCTGAAGAGGCAGGCAACAGAAGCTAGTGAAGGTCTTCTCATGC CATTGGATATTGATGAAGTGAGAGTTGAACAGCAAGAGGATGGTTTGCTCAGTGCCCCTTATGTAATCAGGGCATCTATATGTTGTGATTGCAAGCCTGG AATTCTGTCTGATTTAAGACAAGCACTTGATGCTCTCCATCTAATAATAATGAAGGCAGAGATTGCGACTTTGGAAGGCAGGATGAAGAATGTTTTTGTG ATGAGCAGCTGCAAAGAAGGGGATAGTGGTGATGCTAAAGTACACCAGTTTCTTGCTGGCTCCATCCACCAGGCATTTAGATCCATACTAGACAAATTTT CTGCCTCACAAGAATTCTTATTAAAATCCACACTTTCGAACAAGAGGAGAAGGGTTGACTCATTCAAACCGTCCTTGTCATCTTCTTCAGGAGATCTCTG GTGA
AA sequence Show only first row Show all	>Potri.019G089000.1 pacid=42773548 polypeptide=Potri.019G089000.1.p locus=Potri.019G089000 ID=Potri.019G089000.1.v4.1 annot-version=v4.1 MEPCSWNSTRVQASDFEGMSDGFLVNTGLQAKTRTGPSSTSSLVLDNERGELVEATVRMERKGVAAERSIAALKNHSEAEKKRRARINAHLDTLRSLVPG TRKMDKASLLAEVIAHLKELKRQATEASEGLLMPLDIDEVRVEQQEDGLLSAPYVIRASICCDCKPGILSDLRQALDALHLIIMKAEIATLEGRMKNVFV MSSCKEGDSGDAKVHQFLAGSIHQAFRSILDKFSASQEFLLKSTLSNKRRRVDSFKPSLSSSSGDLW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.019G089000 [exp]	0	1
AT3G07310			Protein of unknown function (D...		Potri.002G247700 [exp]	2.82	0.8952
AT1G67325			Ran BP2/NZF zinc finger-like s...		Potri.003G172500 [exp]	3.16	0.8775
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.010G148100 [exp]	3.31	0.8679	Pt-GAL1.3
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.002G042700 [exp]	5.19	0.8921
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.001G144100 [exp]	6.48	0.8728
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	8.71	0.9064
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G383000 [exp]	9.00	0.8444
AT5G11580			Regulator of chromosome conden...		Potri.018G044400 [exp]	9.53	0.8637
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105300 [exp]	10.95	0.8704
AT1G02740			MRG family protein (.1)		Potri.014G022400 [exp]	16.15	0.8122

Compare expression of checked genes

Potri.019G089000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.