Plant FIBer expression Database

Potri.019G089532 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58610 165 / 9e-46 ketol-acid reductoisomerase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G089100
[exp]
297 / 5e-99 ND /
Potri.011G052700
[exp]
177 / 3e-50 AT3G58610 989 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Potri.004G043700
[exp]
177 / 3e-50 AT3G58610 981 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Potri.014G055100
[exp]
161 / 2e-47 AT3G58610 340 / 2e-114 ketol-acid reductoisomerase (.1.2.3)
Potri.019G089200
[exp]
65 / 2e-11 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022849
[exp]
168 / 8e-47 AT3G58610 978 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Lus10011918
[exp]
168 / 8e-47 AT3G58610 980 / 0.0 ketol-acid reductoisomerase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF07991 IlvN Acetohydroxy acid isomeroreductase, NADPH-binding domain
Representative CDS sequence
>Potri.019G089532.1 pacid=42773599 polypeptide=Potri.019G089532.1.p locus=Potri.019G089532 ID=Potri.019G089532.1.v4.1 annot-version=v4.1
ATGGCTGCTACTTACTGCTTTTATGCTCTACACAGTCCAAAACCACCACCGCCAAAATCTCTACGTAACACCTTTTCACGTAATGGTCTATCTCTCGAAA
GAGGCAAACCCAAGCTGTCAGGCTCAACAGTAGGGTGTAGAATGCCGTTGAAACCGTTGTCAGCTTCTCTTCATTTCGGGACCTTCTACAGCAAGAAGAA
GAAAGTCTCTCTTGATGGTGTTCAGGAAGAGGAGTTACAATTTGAAACTCATTTTGATGCCTCTGTCCCTCTCCCTCCACTCACCATTCCTCCAAAACCA
TCAAAATCCGTCCATTATCCGCAAGAGTTTCTATCACGTGTCATGGCCATGGCAGCTGCTGTCTTGAAAATAAGTGAGCTGCTTAAAACTAGTAATGGTA
GTGGAGGAGGAGGCGGCGGAGAAAAGGACGTGGACGGTGACGGCTCAGCTGATGCGGACTCGCCACCACCGCGTGCTGCAAGTCTTGTTTTTTCCACCCG
CTTTGCAAGCAGGGAGAAGATCTCCCTATCTGGTTATGTAAAAGATACACAATTTGAATTGCATTGCAACGTCTCTGCTTTTCTTTTCGGTGCAAAATTT
TCAAAATTCCTTAAATGGGTCTTCTTCAATCCTGTGGTTGTGCAAGCGATCATAGCTACTATTACTAAAATTCGTGGAGGTGACGGTAGTGTCCATGGCG
GAAGGGGCTCACTTGGTGCTGCTGAAAGGGTCATGCATCCAAGGGTAAAGCTTCGGACCTCTCTTGATTTTCAGACCTTCGTTTTTAAGAAGGAGAAGAT
CATGCTCGCTGGCCATGACAAGTACATTGTGAGAGGAGGCAAGGATGTGTTTCTCTTGCTCCCAGATGCATTCCAGGGCATTAAACAGATTGGTGTCGTT
GGTTGGGTTTCCCAGGGTTCTGTTCAAGCTTGGAATTTAAGGGATGCACTCGCTGAAGCCAAGTGTGATATAAAAGTCAAGGTCGGTCTCGAGAAGGATT
CTTGCTCTTTTGCTGATGCTCGTGCTGCTGGTTTTACTGAAGAGAGCGACACTTTAGGAGTTATCTGGGAAACTATTTCAGGCAGTGATCTTGTGCTTCT
TTTGATTTCCAATGCTGCACAGGTTTGTTTGTTAATTAATCCTTCAGTGTGA
AA sequence
>Potri.019G089532.1 pacid=42773599 polypeptide=Potri.019G089532.1.p locus=Potri.019G089532 ID=Potri.019G089532.1.v4.1 annot-version=v4.1
MAATYCFYALHSPKPPPPKSLRNTFSRNGLSLERGKPKLSGSTVGCRMPLKPLSASLHFGTFYSKKKKVSLDGVQEEELQFETHFDASVPLPPLTIPPKP
SKSVHYPQEFLSRVMAMAAAVLKISELLKTSNGSGGGGGGEKDVDGDGSADADSPPPRAASLVFSTRFASREKISLSGYVKDTQFELHCNVSAFLFGAKF
SKFLKWVFFNPVVVQAIIATITKIRGGDGSVHGGRGSLGAAERVMHPRVKLRTSLDFQTFVFKKEKIMLAGHDKYIVRGGKDVFLLLPDAFQGIKQIGVV
GWVSQGSVQAWNLRDALAEAKCDIKVKVGLEKDSCSFADARAAGFTEESDTLGVIWETISGSDLVLLLISNAAQVCLLINPSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G58610 ketol-acid reductoisomerase (.... Potri.019G089532
[exp]
0 1
AT4G38540 FAD/NAD(P)-binding oxidoreduct... Potri.001G307500
[exp]
2.00 0.8687
AT1G62340 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMA... Potri.011G010700
[exp]
4.00 0.8131 Pt-ALE.2
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.002G154200
[exp]
6.92 0.8293 NAC087
AT1G52920 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, ... Potri.011G122300
[exp]
12.24 0.7076
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Potri.011G113125
[exp]
12.44 0.7904
AT5G13200 GRAM domain family protein (.1... Potri.003G165700
[exp]
13.19 0.7601
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Potri.011G113000
[exp]
13.74 0.7586
AT5G13200 GRAM domain family protein (.1... Potri.003G165600
[exp]
14.14 0.7452
AT3G28210 SAP12, PMZ STRESS-ASSOCIATED PROTEIN 12, ... Potri.011G138500
[exp]
15.81 0.7332 PMZ.1
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.014G107900
[exp]
16.24 0.7319

Potri.019G089532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.