Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18000 52 / 3e-07 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 49 / 2e-06 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G73600 49 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047400 [exp] 49 / 3e-06 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 49 / 3e-06 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033614 [exp] 498 / 7e-178 AT1G23360 48 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10017673 [exp] 483 / 1e-171 AT1G23360 45 / 3e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10018010 [exp] 51 / 8e-07 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042006 [exp] 49 / 5e-06 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 48 / 7e-06 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 47 / 1e-05 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.019G089700.1 pacid=42774169 polypeptide=Potri.019G089700.1.p locus=Potri.019G089700 ID=Potri.019G089700.1.v4.1 annot-version=v4.1 ATGGAATTGTCTTCACATACCCACAACTTCTCTGTTCTCTCAGTAAGCAAAACTATAGAGAATGGAAATGGAAGAAGGAGAGCAAGAATGGTTGTTAAGA TGGCAGCATCAACATCAGATATGGCAGCTGCCTTTGAAGAGGGAAAGCTAGAAAGGCCTAAGTGGTCAGGACAGACGCCTCTCTCTCGTCTTGTTGGAGC TCTTATTGCTTTTAAGCCTCTCTCCTCTGTTCTCAAACTTGGTGCCAGACAAGTCCTTATCAGAACAGCAGAGAAGGGGAACATTCCATGGAGAGAAATG ACAAAGGAGATTCTTGAATCAGATGTGTATAAGGAGCTGGAGGGCATTCAAAATCCCTCACTTGTTTATCCAGATTATTACCTAAATCCTTTCCATGCTT ACGACGAGGGAAATCTTTCATGGCTGGCTGCAGCTGAAGCTGAAGCTGCAACCATGTCAATGGTGAGGCGAGCAATACCTAATGCTTCTACAGTAGATGA AGCAAATCAAGTAGTGCGTGGAAATTGGCTTCAGGCAATTGAACAGCATCATCTACAGTACTCTGGGACTACCATGATTAGAGACATTCTAGATATTGGA TGTTCTGTAGGTGTTAGCACAAGATTTCTGGCTGACAAGTTTCCTTCTGCTAATGTCACTGGGCTAGATCTGTCACCTCACTTTCTTTCCGTAGCTCAAT TCAAGGAAAAGAAGATAGGTCCTAGAAAGAATCCTATTAAATGGATGCATGCTAATGCAGAAGACACAGGCTTTCCACCCCAATCATTCGATCTTGTTTC AGTTTCATATGTGTTTCATGAATGTCCTGAAAGAGCAATAGTTAATATACTGAAGGAAGCATTCGGGCTACTTCGTCCTGGAGGCACAATTGTTGTGTCG GATCAATCACCAAAGTCAAAGATCCTACAGGAAATGTCTCCAGTTCTGTTTACATTATTGAAGAGCACCGAACCATTTCTAGACGAATACCATCTGACTG ACCTAGAAGGAAGAATGGAGGAAGCTGGCTTCATAAAAGTACAAACAGGTCTCACAGATCCAAGACACAGGACCTTGACTGCAACCGTGCCTTGTTAA
AA sequence Show only first row Show all	>Potri.019G089700.1 pacid=42774169 polypeptide=Potri.019G089700.1.p locus=Potri.019G089700 ID=Potri.019G089700.1.v4.1 annot-version=v4.1 MELSSHTHNFSVLSVSKTIENGNGRRRARMVVKMAASTSDMAAAFEEGKLERPKWSGQTPLSRLVGALIAFKPLSSVLKLGARQVLIRTAEKGNIPWREM TKEILESDVYKELEGIQNPSLVYPDYYLNPFHAYDEGNLSWLAAAEAEAATMSMVRRAIPNASTVDEANQVVRGNWLQAIEQHHLQYSGTTMIRDILDIG CSVGVSTRFLADKFPSANVTGLDLSPHFLSVAQFKEKKIGPRKNPIKWMHANAEDTGFPPQSFDLVSVSYVFHECPERAIVNILKEAFGLLRPGGTIVVS DQSPKSKILQEMSPVLFTLLKSTEPFLDEYHLTDLEGRMEEAGFIKVQTGLTDPRHRTLTATVPC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Potri.019G089700 [exp]	0	1
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Potri.006G051100 [exp]	1.00	0.9777	Pt-GUN5.1
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.011G057800 [exp]	3.16	0.9602	APE2.1
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.001G244800 [exp]	5.00	0.9650
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.002G053000 [exp]	5.09	0.9723
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	6.24	0.9684
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.004G229600 [exp]	9.69	0.9389
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.008G220600 [exp]	10.53	0.9226
AT4G01935			unknown protein		Potri.014G117500 [exp]	10.58	0.9368
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.008G077400 [exp]	13.22	0.9625
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Potri.009G080800 [exp]	13.67	0.9589

Compare expression of checked genes

Potri.019G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.