Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58600 337 / 9e-117 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) AT1G03900 144 / 2e-41 ABCI18, ATNAP4 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G117900 [exp] 474 / 3e-171 AT3G58600 331 / 3e-114 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Potri.002G036400 [exp] 149 / 3e-43 AT1G03900 320 / 1e-110 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Potri.005G226400 [exp] 145 / 8e-42 AT1G03900 322 / 3e-111 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000617 [exp] 353 / 3e-123 AT3G58600 324 / 2e-111 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Lus10000356 [exp] 350 / 6e-121 AT3G58600 311 / 2e-105 Adaptin ear-binding coat-associated protein 1 NECAP-1 (.1) Lus10003544 [exp] 144 / 3e-41 AT1G03900 350 / 3e-122 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1) Lus10033908 [exp] 144 / 3e-41 AT1G03900 351 / 2e-122 ATP-binding cassette I18, non-intrinsic ABC protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF07933 [poplar] [flax] DUF1681 Protein of unknown function (DUF1681)
Representative CDS sequence Show only first row Show all	>Potri.019G089800.1 pacid=42774598 polypeptide=Potri.019G089800.1.p locus=Potri.019G089800 ID=Potri.019G089800.1.v4.1 annot-version=v4.1 ATGGAGAAAGTAGAGAAGGCACCAAACGATCCAGAGAGTGAAGAAACTGAAGCCATTGAGCTTATCCTCTATCAAGTCTCTGAATGCTATGTTTATGTGA TACCACCGAGGAAAAGTGCTGCTTCTTACAGGGCTGATGAATGGGATGTCAACAAATGGGCCTGGGAAGGGACTTTGAAAGTCATTAGCAAGGGTGAAGA GTGCATTATCAGACTTGAAGATAAAACCACAGGTGAATTATATGCGCGGGCATTTTTGAGAAAGGGGGAGCTACATCCAGTGGAACCTGTAATTGATAGC AGCAGATATTTTGTTCTGCGGATAGAGGAAAATATAGGTGGTCGCCTTAGGCATGCATTTATTGGCATAGGATTTAGAGAAAGAACAGAAGCTTATGATT TCCAGGCGGCGCTGCATGATCACATGAAATATCTGGACAAGAAGAAAACTGCGGAAGAGATGGAACAGCATTTTCAGGAAACTTCCTCGGTTGATTACAG TTTAAAAGAAGGGGAAACTCTTGTACTCCAAATGAAAAACAAACCTAGAGGTAGTGTGAAGTCCAAGTTTTTCGAGCAGGGTCTGAACAATCTGTCATTG GAGGGGAAGAGCGATGGAAAAGAACCCTTGCTTAGTATCAGACCTCCGCCTCCCCCAGCACCGCCTTCACCCGCTACAAGTGTACAGATTTCTCCATCAA ACTTGCCACCAAAAATTACTCTTGATGGAAATTCTACTGAAAAATCCCCCAACTTGGCCAAGGATGAAGCTGAACAGCAGCATTTTCCTGACAATGAAAG CTCACAAGATATACAAGATGATGATTTCGGAGATTTTCAAGCAGCTGGGTGA
AA sequence Show only first row Show all	>Potri.019G089800.1 pacid=42774598 polypeptide=Potri.019G089800.1.p locus=Potri.019G089800 ID=Potri.019G089800.1.v4.1 annot-version=v4.1 MEKVEKAPNDPESEETEAIELILYQVSECYVYVIPPRKSAASYRADEWDVNKWAWEGTLKVISKGEECIIRLEDKTTGELYARAFLRKGELHPVEPVIDS SRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQHFQETSSVDYSLKEGETLVLQMKNKPRGSVKSKFFEQGLNNLSL EGKSDGKEPLLSIRPPPPPAPPSPATSVQISPSNLPPKITLDGNSTEKSPNLAKDEAEQQHFPDNESSQDIQDDDFGDFQAAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.019G089800 [exp]	0	1
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.014G092400 [exp]	3.16	0.6564
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.001G280600 [exp]	3.74	0.6558	Pt-ATUBA1.5
AT1G76750			Protein of unknown function (D...		Potri.009G077000 [exp]	13.78	0.6888
AT5G01350			unknown protein		Potri.016G118800 [exp]	15.87	0.6561
AT3G24730			mRNA splicing factor, thioredo...		Potri.001G287600 [exp]	19.28	0.6230
AT1G12500			Nucleotide-sugar transporter f...		Potri.001G289900 [exp]	26.98	0.6441
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Potri.001G044200 [exp]	31.93	0.6096
AT2G14830			Regulator of Vps4 activity in ...		Potri.009G090100 [exp]	33.46	0.6504
AT4G13520		SMAP1	small acidic protein 1 (.1)		Potri.010G063100 [exp]	33.46	0.6513
AT3G06140			RING/U-box superfamily protein...		Potri.010G030600 [exp]	41.23	0.5822

Compare expression of checked genes

Potri.019G089800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.