Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31130 84 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118000 [exp] 552 / 0 AT2G31130 85 / 8e-18 unknown protein Potri.001G376800 [exp] 71 / 3e-13 AT1G17780 82 / 3e-17 unknown protein Potri.004G055300 [exp] 56 / 2e-08 AT2G31130 66 / 5e-12 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033615 [exp] 170 / 9e-49 AT2G31130 101 / 2e-23 unknown protein Lus10017672 [exp] 169 / 3e-48 AT2G31130 100 / 4e-23 unknown protein Lus10013926 [exp] 67 / 5e-12 AT2G31130 68 / 1e-12 unknown protein Lus10000990 [exp] 66 / 1e-11 AT2G31130 70 / 3e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G089900.8 pacid=42774044 polypeptide=Potri.019G089900.8.p locus=Potri.019G089900 ID=Potri.019G089900.8.v4.1 annot-version=v4.1 ATGACTATTATGGACCTGAAAGGTATAACATGGGTTGGTGACATTTATCTGAAATTTGAAGCTAGGTTGCTGGAAGTGGAAGAAATTATGCGTGAGGAAG CAGTAAAATATGTCGAAAACCAGATGCAGACTGTTAGTAATAATGTGAGGAAATTCTACTCGGATGTCATGCAAGATTTGTGCTCTCCAGATTCAGAGGA TCCTGCAAATGGGGCAGTCTCCAAATTTCCTGTAGATTCGGGAGCTGATGTTGGGATCTATATGAAGCCAGAAGATGGTATGGAAGAAAAATGTGGAAAG GCTGATGATCCTGAGCAATTGGCTGAGGATCCGAAGATGACTGCTGATTCTGGTTCTGATTGTCTCCCACTGCGTAGAAGGATTACTGTGAGAAGAATTT CAAGGCAGCATAGTAAAGGAAGTCTGTCCAATAAATCAAACCTAGATACTGATAAAAACTCTAACTGCAATAATGTGTCTCCAAATGAGATATCAGGAAC TACCACTCTTTCGAGTAAATTTTCATCAAATGTTGAACTGTCTGATCAAAATCTGGAAGCATCTTGTGATCAGACAGCAAGACTTGCAACTCCAGGGTGT GTTGAAGTTACAGATCATTTCTCCATGGAAGAAAGTAAAAATGAGATAAAAAATGCAAGCAAACACGTGCCAGAGATCTCATTCAATAAACCATCATTGG ATATGGTTAATATCACTGAAACTGGCAGGCATGAAGGAACAGACAGTAGACCTTCCAGCAGAAACCTATTAGAAGAATCAAATGGTGTTTGCATAAGCAA TGAGTTTGTTTCTATGATAGAATCTGCTGCAAATGGGAATATGCAGACTAACAAATTTGCTTATGAGGAGGATTTTGTGTCTAATTCAGATGAATGGGGA ATAGAATCGGATGAAGATGGTACAATCATTGACGAGGGTATGGAAATCATTCGAGCGGACAAGGCTAGGCTTGAGGAAGTATGTGTTTTGGTGAATGTAG ATGAATTTCATCATGTTCCCCGTGAAGGCAAAAACAGGCCTTACAAGAAGATTCGGGATGTTTTTCGTTCAAGAAAGAGGTCAGTGATGAAGGAATATGA GCAGCTTGCTGCACAGTGCAGCAGCGATTCAAAATCCAAAGAAGAAGAGAGTATAACAAGTTTAATGCCAACTCTTTCTATAAAGGAAGCAAACAGATCC TTATCTCATGATCCTTCAGAATCAGAGTGGGAGCTTGTCTAG
AA sequence Show only first row Show all	>Potri.019G089900.8 pacid=42774044 polypeptide=Potri.019G089900.8.p locus=Potri.019G089900 ID=Potri.019G089900.8.v4.1 annot-version=v4.1 MTIMDLKGITWVGDIYLKFEARLLEVEEIMREEAVKYVENQMQTVSNNVRKFYSDVMQDLCSPDSEDPANGAVSKFPVDSGADVGIYMKPEDGMEEKCGK ADDPEQLAEDPKMTADSGSDCLPLRRRITVRRISRQHSKGSLSNKSNLDTDKNSNCNNVSPNEISGTTTLSSKFSSNVELSDQNLEASCDQTARLATPGC VEVTDHFSMEESKNEIKNASKHVPEISFNKPSLDMVNITETGRHEGTDSRPSSRNLLEESNGVCISNEFVSMIESAANGNMQTNKFAYEEDFVSNSDEWG IESDEDGTIIDEGMEIIRADKARLEEVCVLVNVDEFHHVPREGKNRPYKKIRDVFRSRKRSVMKEYEQLAAQCSSDSKSKEEESITSLMPTLSIKEANRS LSHDPSESEWELV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31130			unknown protein		Potri.019G089900 [exp]	0	1
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Potri.002G126300 [exp]	5.65	0.8142
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.001G010500 [exp]	9.94	0.7755
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015200 [exp]	13.85	0.7942
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.008G165000 [exp]	15.23	0.7775
AT4G37480			Chaperone DnaJ-domain superfam...		Potri.007G052400 [exp]	16.15	0.7032
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	17.02	0.8115
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Potri.010G045500 [exp]	17.20	0.7420
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Potri.001G374100 [exp]	18.76	0.7747
AT1G64140			unknown protein		Potri.003G134200 [exp]	20.39	0.7634
AT4G21865			unknown protein		Potri.010G065666 [exp]	21.63	0.7738

Compare expression of checked genes

Potri.019G089900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.