Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12060 290 / 2e-92 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 289 / 2e-91 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT1G60790 283 / 5e-90 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G01360 279 / 9e-90 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G58600 276 / 5e-89 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G78710 275 / 5e-89 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT1G29050 275 / 7e-89 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT3G62390 276 / 6e-88 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G54260 272 / 1e-87 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1) AT5G20590 275 / 3e-87 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072800 [exp] 299 / 5e-98 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.001G278300 [exp] 292 / 3e-95 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G020900 [exp] 284 / 8e-92 AT3G54260 495 / 1e-175 TRICHOME BIREFRINGENCE-LIKE 36 (.1) Potri.010G043300 [exp] 287 / 2e-91 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.004G055000 [exp] 280 / 6e-91 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G064700 [exp] 278 / 2e-90 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.016G059300 [exp] 286 / 3e-90 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.002G195800 [exp] 283 / 1e-89 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.019G090200 [exp] 276 / 2e-89 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017671 [exp] 413 / 5e-142 AT3G62390 270 / 7e-86 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10013035 [exp] 289 / 5e-92 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 285 / 1e-91 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 284 / 5e-91 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10013929 [exp] 277 / 1e-89 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 275 / 2e-88 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10033617 [exp] 274 / 2e-88 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10000988 [exp] 273 / 2e-88 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10021066 [exp] 280 / 6e-88 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10031871 [exp] 273 / 1e-87 AT5G58600 450 / 8e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.019G090000.1 pacid=42774036 polypeptide=Potri.019G090000.1.p locus=Potri.019G090000 ID=Potri.019G090000.1.v4.1 annot-version=v4.1 ATGGACCTCTCTACAACCTTGAAGAAGCACAAACACACAGAAGGCATGGAAGCTGGTAGTTCCACCATTGGTAAAAATTGGAGGCTTTGCATATTTGCAA GCTTCATGAGTTTCATTGTACTGATGTTTTTTCAAAAACAATGTCAGAACAGCCCGAAACTTTCATCACTTCTAAATGTTGGTGTATCGATGTCAATGTC CAGTCTCACGTCCACGTCTAGTGAACTCTTGGAGTCCACAAACTTGGTCAAGAATGAGAGCACAAACTTGGTCGAGAATGACTTGAACCCTATGAAAGAG GAGGAAGTGAAGTGCAATATATTTGATGGAAAATGGGTTTATGAACCAGAGGGAGGCCCTCAACATACTGCAGCTGAATGTCCGTTTCTTAGTGAACAGG TAAGCTGCCAGAGGAATGGAAGGCCAGACTTTGAATATGAGAAATGGAGCTGGGAAGCCAAAGACTGTGATGTTCCAAGGTTTAATGGCATAGACATGTT GGAGAGACTAAGAGGAAAGAGGGTGATAATAGTAGGAGATTCCCTCAACAGAAACCAATGGGAATCTCTAGCTTGCCTTCTATATTCAGCCATACCTTCT TCCCAAGCTCATGTTGATGTTCGTGGCGGCGTCTATAAGGTCTTCAAAGCGAAGGACTATAATTGTTCTGTGGAGTTTTATTGGAGCCCATTTTTGGTGC GACTTAAGCAAGAAAATGGGAGCAGAATTCTAAGGCTTGACAAACTGTCACCCTTAGCCAAGAAGTGGCGTGGAGCTGATGTCATGGTATTCAACACTGC CCATTGGTGGGTTCACAGTGGGAAAGTGAAGTCGTGGGATTTGTTTCAATACAAAGGAAAATTAGTTGAGGAGATGGAGATCGAGTCTGCATTAAGGAAA GGCATGAGGACTTGGGCTCGTTGGATCGATCACCATGTTGATGCATCCAAAACAACTGTCTTTTTCCGCAGCATATCGCCACAACACCAAGGGAAGCAAT GGTGTTACAATATAACACAACCCAATATGGATGAATCGTATGTGTCTGCATTTCCTAAACCAATGAAAGAAATTATTGAGATAACAATTCGAAGCATGAT GATACCAGTGAGATACCTGAACATTACAAAGCTATCCGGGTATAGAAGAGATGCACATCCAGCTTTGTATGCAAGAAAACAGGAAAAGCTTTTGAAAACT GAGCAGCAACTGCAAGAAGAATCTCATCCTGATTGCAGTCATTGGTGTTTACCAGGGCTACCTGATACATGGAACAGGCTTTTGTATGCATCCTTGGTCT TGGACACTTCAGATTCCAAGCATTTGGTTGTTTGA
AA sequence Show only first row Show all	>Potri.019G090000.1 pacid=42774036 polypeptide=Potri.019G090000.1.p locus=Potri.019G090000 ID=Potri.019G090000.1.v4.1 annot-version=v4.1 MDLSTTLKKHKHTEGMEAGSSTIGKNWRLCIFASFMSFIVLMFFQKQCQNSPKLSSLLNVGVSMSMSSLTSTSSELLESTNLVKNESTNLVENDLNPMKE EEVKCNIFDGKWVYEPEGGPQHTAAECPFLSEQVSCQRNGRPDFEYEKWSWEAKDCDVPRFNGIDMLERLRGKRVIIVGDSLNRNQWESLACLLYSAIPS SQAHVDVRGGVYKVFKAKDYNCSVEFYWSPFLVRLKQENGSRILRLDKLSPLAKKWRGADVMVFNTAHWWVHSGKVKSWDLFQYKGKLVEEMEIESALRK GMRTWARWIDHHVDASKTTVFFRSISPQHQGKQWCYNITQPNMDESYVSAFPKPMKEIIEITIRSMMIPVRYLNITKLSGYRRDAHPALYARKQEKLLKT EQQLQEESHPDCSHWCLPGLPDTWNRLLYASLVLDTSDSKHLVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12060		TBL1	TRICHOME BIREFRINGENCE-LIKE 1,...		Potri.019G090000 [exp]	0	1
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	16.55	0.8280
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014501 [exp]	16.79	0.8053
AT5G03860		MLS	malate synthase (.1.2)		Potri.012G094532 [exp]	20.73	0.7883
AT3G09110			Protein of unknown function (D...		Potri.010G210500 [exp]	23.23	0.8009
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004166 [exp]	55.53	0.7790
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G444600 [exp]	55.69	0.7794
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	70.48	0.7615
					Potri.014G013200 [exp]	83.94	0.6834
AT4G27190			NB-ARC domain-containing disea...		Potri.001G423925 [exp]	92.60	0.7524
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G010300 [exp]	95.01	0.7130

Compare expression of checked genes

Potri.019G090000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.