Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42570 507 / 0 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 469 / 3e-166 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G29050 451 / 4e-159 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 439 / 3e-154 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT3G14850 389 / 6e-135 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT1G78710 382 / 5e-132 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT2G30900 369 / 5e-127 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT5G58600 332 / 1e-111 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 319 / 1e-106 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT3G54260 286 / 5e-94 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118500 [exp] 618 / 0 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G064700 [exp] 478 / 1e-169 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 455 / 5e-161 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 414 / 1e-144 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 401 / 2e-139 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 391 / 1e-135 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.001G023900 [exp] 389 / 2e-134 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G135600 [exp] 381 / 1e-131 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.003G201600 [exp] 376 / 8e-130 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002198 [exp] 518 / 0 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10033617 [exp] 509 / 0 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10000988 [exp] 448 / 4e-158 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 444 / 2e-156 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 429 / 2e-150 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10009209 [exp] 346 / 7e-118 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Lus10039559 [exp] 345 / 1e-117 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 337 / 1e-113 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10031871 [exp] 332 / 8e-112 AT5G58600 450 / 8e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10024176 [exp] 331 / 2e-111 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.019G090200.1 pacid=42774363 polypeptide=Potri.019G090200.1.p locus=Potri.019G090200 ID=Potri.019G090200.1.v4.1 annot-version=v4.1 ATGGCTATCTTGTTCAAACCCGGCCTGTTTCTCTCGCTGTTTTTGTTGATATCTTCTTACCATACAGCAACAGAAGCTTCAAAAGTCGCCCAGAGCCTCA ACTTCAACAGTACCTTCAGCAATGGTACCAGCAATGCTAGAGAACTTGCCGGCAAGTGCAACTGGTTCAGAGGAAAATGGGTTTTTGATCCTAAATATCC TCTCTACGACTCAAATTGTCCCTTCATAGATCCACAGTTCAATTGTCAAAAGTATGGCAGACCTGATAGCTATTATCTCAAGTATCGGTGGCAACCTTTT GCATGTGACTTGCCCAGGTTTAATGGGCTATATTTCTTGGAGAAATGGAGAGGGAAGAAGATTATGTTTGTAGGTGACTCGTTGAGTTTGAACCAGTGGA CATCTCTAACGTGTTTGATTCATTCATGGGTACCAAATTCAAAGTATACACTGTTTAGGACAGATGTGCTATCTTCTCTTACATTTGAGGACTTCGGAGT CAAGATACTGCTATATCGAACGACATACCTGGTAGATCTTGTCAATGACAAGGCAGGACGAGTATTGAAGCTTGATTCGATAAACAATGGCAACGCATGG CTAGGCATGGACATGTTGATCTTCAACACTTGGCATTGGTGGACCCATACTGGAAGATCTCAGCCATGGGATTATATCCAAGAAGGGGGTAAATTGTACA AAGATATGAACCGGCTAATTGCATTTTACAAGGGACTAACCACCTGGGCTAGATGGGTCAACCACAATGTTGATCCTTCTAAAACCAAAGTCTTCTTCCA GGGCGTTTCTCCTACACATTATGTGGGCGGGGATTGGAATGAGCCATCAAAGTCATGTGCTGCTGAGACACAACCGTTCTTTGGAACAAGGTACCCAGCA GGAACACCGTTAGCTTGGGCTGTAGTTAACAAGGTTTTGAGCAGGATTCAGAAACCAGTCTACTTATTAGACGTGACCACACTTTCTCAGTACCGAAAAG ATGCACATCCTTCGCATTACGGCGGCGACAATGGTGGCACAGATTGTAGCCACTGGTGTCTACCAGGATTGCCTGATACTTGGAACCAACTTCTATATGC AGCCCTCTTCGGTTGA
AA sequence Show only first row Show all	>Potri.019G090200.1 pacid=42774363 polypeptide=Potri.019G090200.1.p locus=Potri.019G090200 ID=Potri.019G090200.1.v4.1 annot-version=v4.1 MAILFKPGLFLSLFLLISSYHTATEASKVAQSLNFNSTFSNGTSNARELAGKCNWFRGKWVFDPKYPLYDSNCPFIDPQFNCQKYGRPDSYYLKYRWQPF ACDLPRFNGLYFLEKWRGKKIMFVGDSLSLNQWTSLTCLIHSWVPNSKYTLFRTDVLSSLTFEDFGVKILLYRTTYLVDLVNDKAGRVLKLDSINNGNAW LGMDMLIFNTWHWWTHTGRSQPWDYIQEGGKLYKDMNRLIAFYKGLTTWARWVNHNVDPSKTKVFFQGVSPTHYVGGDWNEPSKSCAAETQPFFGTRYPA GTPLAWAVVNKVLSRIQKPVYLLDVTTLSQYRKDAHPSHYGGDNGGTDCSHWCLPGLPDTWNQLLYAALFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Potri.019G090200 [exp]	0	1
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Potri.014G140300 [exp]	1.73	0.8460	Pt-EXT.15
AT4G24630			DHHC-type zinc finger family p...		Potri.005G195300 [exp]	25.69	0.8309
AT2G36080	B3	ABS2, NGAL1	AP2/B3-like transcriptional fa...		Potri.006G208100 [exp]	33.74	0.8032
AT3G18170			Glycosyltransferase family 61 ...		Potri.012G051500 [exp]	46.47	0.8344
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.002G068900 [exp]	47.52	0.8344	Pt-SEC5.2
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Potri.008G220400 [exp]	48.98	0.7781	Pt-MFP2.3
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Potri.009G025300 [exp]	91.10	0.8076
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.015G099600 [exp]	95.70	0.7759
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	124.96	0.7908
AT4G08330			unknown protein		Potri.014G197000 [exp]	140.47	0.7875

Compare expression of checked genes

Potri.019G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.