Plant FIBer expression Database

Potri.019G090300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42560 85 / 3e-17 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
AT3G53040 71 / 6e-13 late embryogenesis abundant protein, putative / LEA protein, putative (.1)
AT2G36640 69 / 3e-12 ATECP63 embryonic cell protein 63 (.1)
AT2G18340 54 / 1e-07 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G118600
[exp]
195 / 4e-56 AT2G42560 91 / 5e-19 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Potri.015G060600
[exp]
52 / 4e-07 AT2G36640 200 / 2e-59 embryonic cell protein 63 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000465
[exp]
193 / 5e-55 AT2G42560 207 / 6e-59 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Lus10002197
[exp]
161 / 1e-43 AT2G42560 153 / 7e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1)
Lus10008638
[exp]
45 / 0.0001 AT2G36640 249 / 4e-77 embryonic cell protein 63 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02987 LEA_4 Late embryogenesis abundant protein
Representative CDS sequence
>Potri.019G090300.1 pacid=42774134 polypeptide=Potri.019G090300.1.p locus=Potri.019G090300 ID=Potri.019G090300.1.v4.1 annot-version=v4.1
ATGGCATCTGAGCAATCCAGGAGAGAGAGCGCTACAAGTGAGAGAGAGAATTATGTGGAGAGAGAAAGAGTCCCAAAAATGGCTAGCCATTTTGAGTCTT
TGATAGAGAAAACAAAAGAATCAGTCGTCGAAGAAAACATCGGTGAAGGTGGCAATGAAACGGGAGCCCAGTACTTTGAGTCTCTTGCTGACAAAATGAG
AGGAGCTGGGACGGATGTTTCTAGTGATAAAGAAAGGGAAAGAAGAGAAGAAGAACAAGAACAAGTGGAAGGGGGTGGAAAAGAAACCGAAGGCAAACAA
GAGGCGAATGGTAGTGATCGAAACAAAGAGCAACAACTTTCTCTCGATGAAATAACGAAGTTAAGAGAAACGGCGCAAAAAAATTCGTTCGAGGCTTTAA
ATGCAGCTGAAGAAAGATATGAGAAAGCAAAAGAGAAGGCAAGCCGAGTTGTGGGTTCTGCAACTAAGACTGTGAAAGAGAAATTTCCTCAAGCAAAAAA
CACTTTTGCTGAGAAGGCTGCACAACCTAAAGACATTGCTGCGGAGAAGGCCGCACAAGTCAGAGACATTGCTGCACAGAAGGCCGCACAGACAAAGGAC
ATTACTGCACAGAAGGCCGCACAAGCAAAGGACACTCTAGTTGAAGGGGCTCAAAAAACTACCCATTATATCGCAGAGAAGGGAGCACAAGCAAAAGACA
CCATTGTTGAAGGTGCTAAGAAAACTTCAGAGTATGTTGTAGAGAAGAGCAAAGGGGCCATGGGTTATACAGTAGAGAAGGCAGTAGCAGCTAAAGATGT
GACTGTGGAAAGTGGCAAAGAGGCCGCTTGTTATGTAGAGAAAGTGGCCGTGGATGTGAAAGACAAGGCCGCTGCAGCTGGATGGACTGCTGCTCATTAC
ACAACTGAAAAAGCTGTGGAGGGGACTAAGGCAGCCGCGAGGGCAGTAGAGTATGCTGGTCAGAAGACTACCGAGCTTGCAGGGAAGCCATTGGGTGCTG
CTAAAGATACTGCTGCGTCTACTGGTGAAAGTATCAAGGAGTATACAGCTAGGAAGAAAGAGGAGGCCGAGAGAGAAATTGAGGCTCGAAAAGCTGCAGA
AGGACAGAGGAGTTTCCAGGGAGGAGAATTCAGGGAAGAATCACAAGTTCATGCAACAGGAGGTCAAGGAGCAGAGGAAGGGAACGTCCCAAAGAAAGTC
GCCCCAGAAGGCGACGAACAAGAAGAACAATATTGGCGGCGGCAGCAGCGACAAGAAGGAAGCAGCTTACTGGGCGCCATTACCGAAACTATAGTGGAGA
TTGCTCAAGCAACCAAAGATCTAGTTATTGGGCAAGACCCACCTGGAGCTGGGAAGAAGGGTGGCTATGAGGCAAGCCATTTGGAGTATGGGAAGCAAGA
AGAACATTAA
AA sequence
>Potri.019G090300.1 pacid=42774134 polypeptide=Potri.019G090300.1.p locus=Potri.019G090300 ID=Potri.019G090300.1.v4.1 annot-version=v4.1
MASEQSRRESATSERENYVERERVPKMASHFESLIEKTKESVVEENIGEGGNETGAQYFESLADKMRGAGTDVSSDKERERREEEQEQVEGGGKETEGKQ
EANGSDRNKEQQLSLDEITKLRETAQKNSFEALNAAEERYEKAKEKASRVVGSATKTVKEKFPQAKNTFAEKAAQPKDIAAEKAAQVRDIAAQKAAQTKD
ITAQKAAQAKDTLVEGAQKTTHYIAEKGAQAKDTIVEGAKKTSEYVVEKSKGAMGYTVEKAVAAKDVTVESGKEAACYVEKVAVDVKDKAAAAGWTAAHY
TTEKAVEGTKAAARAVEYAGQKTTELAGKPLGAAKDTAASTGESIKEYTARKKEEAEREIEARKAAEGQRSFQGGEFREESQVHATGGQGAEEGNVPKKV
APEGDEQEEQYWRRQQRQEGSSLLGAITETIVEIAQATKDLVIGQDPPGAGKKGGYEASHLEYGKQEEH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42560 late embryogenesis abundant do... Potri.019G090300
[exp]
0 1
AT4G17030 ATHEXPBETA3.1, ... expansin-like B1 (.1) Potri.003G083200
[exp]
1.00 0.9824 PtrEXLB1,EXLB1.1
Potri.017G080900
[exp]
2.44 0.9776
AT4G03540 Uncharacterised protein family... Potri.004G043300
[exp]
4.89 0.9761
AT1G56600 ATGOLS2 galactinol synthase 2 (.1) Potri.005G006800
[exp]
5.91 0.9624
AT5G38760 Late embryogenesis abundant pr... Potri.004G107900
[exp]
6.70 0.9741
AT1G79800 AtENODL7 early nodulin-like protein 7 (... Potri.001G187700
[exp]
7.07 0.9543
AT1G30820 CTP synthase family protein (.... Potri.001G073100
[exp]
7.41 0.8937
AT3G22600 Bifunctional inhibitor/lipid-t... Potri.010G085300
[exp]
7.74 0.9740
AT4G08570 Heavy metal transport/detoxifi... Potri.002G092200
[exp]
9.38 0.9605
AT1G52690 LEA7 LATE EMBRYOGENESIS ABUNDANT 7,... Potri.001G173200
[exp]
9.48 0.9481

Potri.019G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.