Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58590 793 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 357 / 7e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 352 / 5e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 329 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 326 / 2e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 326 / 1e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 329 / 3e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 323 / 3e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 317 / 2e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G02330 316 / 2e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 381 / 2e-118 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 379 / 9e-118 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 366 / 3e-113 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 353 / 4e-109 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 344 / 9e-107 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G027400 [exp] 338 / 1e-104 AT4G13650 408 / 8e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 338 / 1e-103 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 340 / 2e-103 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 325 / 3e-99 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026937 [exp] 883 / 0 AT3G58590 715 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 370 / 1e-114 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 352 / 2e-107 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 342 / 3e-105 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013578 [exp] 344 / 2e-104 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10015414 [exp] 339 / 1e-103 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 336 / 1e-103 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033685 [exp] 340 / 4e-103 AT1G16480 962 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013991 [exp] 338 / 6e-103 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 333 / 5e-102 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.019G091000.1 pacid=42773333 polypeptide=Potri.019G091000.1.p locus=Potri.019G091000 ID=Potri.019G091000.1.v4.1 annot-version=v4.1 ATGAGCTTCCATGGAGATTTCCTCAAATACCAATATCGTCTCCTCCAACTTCTCCAATCTTGTTCAAAACTTCGTGCCCTTGACACAACAAAGCCACTCC ATGCACTCACCATTACTATCGGCCCAAACCCAGAGCAATCCACCTTTGTTTACAACAATATTATTTCTTTCTATGCATCATTCAACCAAGTACCAATGGC GCACAAAGTGTTCGACAATATGCCTCAAAGAAACAAAGTGTCTTACAATTCAATTATTAGCTGTTTTAGTAAATATGGTTATTTAGAGGAAGCTTGGAGA ACGTTTTGTGAGATGATAGATTGTGGGTTCAGGCCGAATAACTTTACCTTGTCTGGTTTGTTATCGTGTGCGTCAATGGATGTCGGTCGTGGGATTATGT TGCAGGCACTGGCAATAAAGAACGGGTTGTTCTGTAGTGATGCTTTTGTGGGCACTGCTTTGTTGGGTTTATTTGGAAGATGTGGGTGGTTAGATGAAGC ATTCCATGTTTTTGAAGATATGCCTAATAAAAGCTTGGTGACATGGAATTCGATGATATCATTGTTGGGGCATCATGGTTTTGTGGAAGATTGTGTTGTT TTGTTTCGCAAGCTTGTTAGGAAAGAGGGTTCTTTGTCTAAATGTTCTTTTGAGGGTGTTTTATCGGGGTTGGTGTGTGAAGAAGATTTGGAATTCGGAG GACAAATTCATGGTTTGGTCATTAAAAGCGGGCTTGATTGTGAAGTTTTAGTTTCGAATTCTCTTATCAATATGTATGCGAGACGTTCAAGCATGTCCCA AGTGGAGAAACTGTTTGAGGAAGTAGATGGTAGGGATGTAGTCACGTGGAACACAATAATTAGTGCCTTCTCAAAAAGTAAGAACCCTGGAAAAGCATTA GAAGTCTTTCTGAAAATGTCTGAGGATGGAATAATGCCTAACCAGACCACATTTGTAAGTGTCATTAACTCTTGCACCAGTTTGCTGGTCCCAATGTGTG GAGAATATGTCCATGGTAAAATAGTGAAAACTGCTCTTGAAACAGATGTTTATTTGGGTAGTGCCTTGGTTGATTATTATGCCAAATGTGGTAAACTGGA TAATGCCCATTATTGCTTTCGCGAGATACATCAGAAGAATGTGGTCTCTTGGAATTCTTTGATCCTCGGTTATGCAAATAAATGCTCTTTTGCTTCTGTT TCTTTGTTGCTAGAAATGCTCAAGTTAGGCTTCCGACCTAATGAATTTTCATTTTCTGCTGTTCTTAAATCATCCTTGGTTTTAGAGCTAAAGCAGATTC ATAGCCTGACTATAAGATTGGGCTATGAGAATAATGAATATGTATTGACCTCCCTTATTACCTCCTATGGCAGGAATGGTCTCATAACTGATGCTCTGAT CTTTGTTAAAGCTTCTGAAACACTACTTGCTGTTGTTCCCGCTAACAGCATTGCTGGAATTTATAACAGATCTGGCCAATACTTTGAGACATTAAAGTTT CTTTCTCAGCTTGAAGAACCAGACACTGTGTCTTGGAACATTGTTATTGCAGCTTGTGCACGCAATGGAAATTACAATGAGGTTTTTGAACTTTTTAAAC ACATGCGTGTTGCTCAAATGCTTCCAGACAATTACACATATACAAGTCTTCTATGTGTGTGTAGTAAGGTCTGTAACCTTGCTCTGGGAAGTTCTATTCA TGGTCTCCTCATAAAGACTAATTTCAGTTATTTTGATATTGTTGTCCGCAATGTGTTAATAGACATGTATGGAAAGTGTGGCAACCTTGAAAGTTCAGTA AAGATTTTTGACAGTATGACAGAGAGAAACCTAATTACATGGACAGCTCTAATTTCAGCCCTTGGAATTAATGGCTGTGCTCAGGAAGCATTAGAAAGGT TTAATGATATGGAATTTCTAGGTTCTAGACCTGATAAGGTTGCTTTTATTGCGGTGCTTACGGCATGCAGACATGGTGCTTTAGTCAGAGAAGGGATGCA GTTGTTTGGTAAAATGAATAATTACCATATTGAACCAGATATGGATCATTATCATTGTTTAGTGGACTTATTGGCTAGGAATGGACATCTTGAGGAAGCA GAGAAAGTGATTTCCTGCATGCCTTTCCCACCAGATGCCCAAATATGGCGTAGCTTTCTTGAAGGTTGCAAGAAACGTAGAAATACTGAGGATCATGCAG TGTGCATAAAGTAA
AA sequence Show only first row Show all	>Potri.019G091000.1 pacid=42773333 polypeptide=Potri.019G091000.1.p locus=Potri.019G091000 ID=Potri.019G091000.1.v4.1 annot-version=v4.1 MSFHGDFLKYQYRLLQLLQSCSKLRALDTTKPLHALTITIGPNPEQSTFVYNNIISFYASFNQVPMAHKVFDNMPQRNKVSYNSIISCFSKYGYLEEAWR TFCEMIDCGFRPNNFTLSGLLSCASMDVGRGIMLQALAIKNGLFCSDAFVGTALLGLFGRCGWLDEAFHVFEDMPNKSLVTWNSMISLLGHHGFVEDCVV LFRKLVRKEGSLSKCSFEGVLSGLVCEEDLEFGGQIHGLVIKSGLDCEVLVSNSLINMYARRSSMSQVEKLFEEVDGRDVVTWNTIISAFSKSKNPGKAL EVFLKMSEDGIMPNQTTFVSVINSCTSLLVPMCGEYVHGKIVKTALETDVYLGSALVDYYAKCGKLDNAHYCFREIHQKNVVSWNSLILGYANKCSFASV SLLLEMLKLGFRPNEFSFSAVLKSSLVLELKQIHSLTIRLGYENNEYVLTSLITSYGRNGLITDALIFVKASETLLAVVPANSIAGIYNRSGQYFETLKF LSQLEEPDTVSWNIVIAACARNGNYNEVFELFKHMRVAQMLPDNYTYTSLLCVCSKVCNLALGSSIHGLLIKTNFSYFDIVVRNVLIDMYGKCGNLESSV KIFDSMTERNLITWTALISALGINGCAQEALERFNDMEFLGSRPDKVAFIAVLTACRHGALVREGMQLFGKMNNYHIEPDMDHYHCLVDLLARNGHLEEA EKVISCMPFPPDAQIWRSFLEGCKKRRNTEDHAVCIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58590			Pentatricopeptide repeat (PPR)...		Potri.019G091000 [exp]	0	1
AT1G20230			Pentatricopeptide repeat (PPR)...		Potri.002G021300 [exp]	2.23	0.9077
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	3.16	0.9024
AT1G23450			Tetratricopeptide repeat (TPR)...		Potri.008G212000 [exp]	10.19	0.9001
AT2G39020			Acyl-CoA N-acyltransferases (N...		Potri.008G037700 [exp]	10.39	0.8842
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	11.74	0.8904
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.014G167800 [exp]	12.84	0.8742
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.006G252400 [exp]	13.11	0.8497
AT3G23710		AtTic22-III	translocon at the inner envelo...		Potri.002G236000 [exp]	14.69	0.8850
AT3G22690			unknown protein		Potri.010G083700 [exp]	16.73	0.8655
					Potri.010G065733 [exp]	16.73	0.8810

Compare expression of checked genes

Potri.019G091000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.