Plant FIBer expression Database

CLE3.1 (Potri.019G091100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CLE3.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06225 39 / 3e-05 CLE3 CLAVATA3/ESR-RELATED 3 (.1)
AT2G31081 37 / 0.0001 CLE4 CLAVATA3/ESR-RELATED 4 (.1)
AT4G18510 36 / 0.0002 CLE2 CLAVATA3/ESR-related 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G119100
[exp]
97 / 3e-28 AT2G31081 57 / 2e-12 CLAVATA3/ESR-RELATED 4 (.1)
Potri.011G063700
[exp]
47 / 2e-08 AT1G73165 45 / 4e-08 CLAVATA3/ESR-RELATED 1 (.1)
Potri.004G053700
[exp]
45 / 4e-08 AT1G06225 38 / 3e-05 CLAVATA3/ESR-RELATED 3 (.1)
Potri.011G096800
[exp]
41 / 3e-06 AT1G73165 45 / 6e-08 CLAVATA3/ESR-RELATED 1 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G091100.1 pacid=42773706 polypeptide=Potri.019G091100.1.p locus=Potri.019G091100 ID=Potri.019G091100.1.v4.1 annot-version=v4.1
ATGGCCAATTTGAAGCTCTGGGTGTGCCTTCTTTTGCTGTTTCTTACGTTTTCCAAATCAGAAACTAGACTTCTTGATCAGCCTTACCTCGGGAGGAAGA
ACCCAGCAAGAATGCTGCAAGAACTGAATGAGAAATCAAAACAACTCTTCGAAGACGATTCAGATGTGACCGGAAGCCCTTACGAACCGAAACGAATCAG
TCCTGGAGGGCCAGACCCCAAACATCATTAA
AA sequence
>Potri.019G091100.1 pacid=42773706 polypeptide=Potri.019G091100.1.p locus=Potri.019G091100 ID=Potri.019G091100.1.v4.1 annot-version=v4.1
MANLKLWVCLLLLFLTFSKSETRLLDQPYLGRKNPARMLQELNEKSKQLFEDDSDVTGSPYEPKRISPGGPDPKHH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06225 CLE3 CLAVATA3/ESR-RELATED 3 (.1) Potri.019G091100
[exp]
0 1 CLE3.1
AT4G33880 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (... Potri.001G294300
[exp]
3.16 0.8941
AT2G45750 S-adenosyl-L-methionine-depend... Potri.015G139000
[exp]
4.24 0.9489
AT1G73165 CLE1 CLAVATA3/ESR-RELATED 1 (.1) Potri.011G063700
[exp]
6.48 0.8691
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Potri.011G026200
[exp]
9.32 0.9137
AT2G31083 AtCLE5, CLE5, C... CLAVATA3/ESR-RELATED 5 (.1) Potri.019G090800
[exp]
9.48 0.9062 CLE4.1
AT2G47540 Pollen Ole e 1 allergen and ex... Potri.014G126300
[exp]
10.24 0.9022
AT4G25250 Plant invertase/pectin methyle... Potri.015G128900
[exp]
12.64 0.9000
Potri.006G017750
[exp]
12.72 0.9048
AT2G31081 CLE4 CLAVATA3/ESR-RELATED 4 (.1) Potri.013G119100
[exp]
14.07 0.8551 Pt-CLE3.2
AT1G68630 PLAC8 family protein (.1) Potri.010G127800
[exp]
22.80 0.8692

Potri.019G091100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.