Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 520 / 0 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT1G07720 451 / 1e-156 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT2G28630 441 / 7e-153 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G01120 309 / 3e-100 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 298 / 2e-96 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G16280 289 / 6e-93 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G15090 286 / 5e-92 KCS8 3-ketoacyl-CoA synthase 8 (.1) AT4G34520 286 / 7e-92 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT1G19440 285 / 2e-91 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G68530 285 / 3e-91 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G119600 [exp] 700 / 0 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 653 / 0 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 615 / 0 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.010G212600 [exp] 566 / 0 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.009G026800 [exp] 469 / 5e-164 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 463 / 2e-161 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.008G048500 [exp] 374 / 3e-128 AT5G04530 337 / 2e-113 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 304 / 2e-98 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G196200 [exp] 295 / 2e-95 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023458 [exp] 527 / 0 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 523 / 0 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10005434 [exp] 427 / 4e-147 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10039906 [exp] 426 / 3e-145 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10015222 [exp] 422 / 4e-145 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10002191 [exp] 421 / 9e-145 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 396 / 1e-134 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 384 / 8e-127 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10002192 [exp] 371 / 4e-126 AT5G04530 389 / 1e-132 3-ketoacyl-CoA synthase 19 (.1) Lus10040873 [exp] 364 / 1e-123 AT2G28630 546 / 0.0 3-ketoacyl-CoA synthase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF02797 [poplar] [flax] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein
Representative CDS sequence Show only first row Show all	>Potri.019G091600.1 pacid=42774430 polypeptide=Potri.019G091600.1.p locus=Potri.019G091600 ID=Potri.019G091600.1.v4.1 annot-version=v4.1 ATGGAGTTGTTCTTGGCATTCTGTCTGCTACTATTATTCTATGCTATCTCCAAGCTTTGTAAGTTGGCATACCAAAAGAGAGACCAACGTTGTTATATGC TAAGCTATCAGTGCCAAAAAGACGCTGAGGACCGAAAGCTTGATACTGGATCTGTTAGTTCTGGCATTGGAGAAGAAACTTATTGCCCGAGGAATGTCAT AGAAGGAAGAGAGGAATCTGCAACTCTTATGGATGCACTTTCGGAGATGGATGATATCATTTTTGATACTCTTGACAAGCTCTTTGCTAAGACAGGAGTT TCTCCATCAGAGATTGACATTATTGTCGCTTCAGTCTCTCTGTTCTCCCCAGCTCCCTCTCTATCGGCTCGAGTAATAAAGCGTTACAAGATGAGGAAGG ACATCAAGGCATTCAATCTCTCTGGAATGGGTTGCAGTGCAAGTGTGGTAGCGGTTGATTTAGTCAAGCAATTGTTCAAGACATACAGGAATTCATTTGC AATTGTTGTGAGCACAGAATCCATAGGTCCAAATTGGTATTCTGGCAAAGAGAAGTCCATGATGCTCTCCAACATTCTATTTCGTACCGGGGGCTGCTCC ATGCTCTTAACAAATAATAGAGCTTTGAAGGAAAACGCCCTCTTGGAATTGACTTGTGCTGTACGCACACATATCGGCTCTGATCACGAAGCATACAGCA GCTGTATCCAAATCTACCAAGAGCGCGCTGGTGCTAAAGCTTTAACCATGATCCTCCGAGTTCTTCTTCCTAAAGTTCTACCACTGTCAGAAATGCTCCG CTATAAAATAAGCTATTATCGAAATAAAATAACGAAGAGGTCAACTCCTAAGGGTATTGCAGGACCTGGTTTGAATCTCAAGTCTGGAATCGACCACTTT TGTGTGCACCCTGGTGGACGGGCAATTATCGATGAGGTTGGCAAGAGTTTAGCACTCAACGATCATGATCTTGAACCAGCTAGAATGGCACTTTATCGGT TTGGAAACACATCATCCGGTGGCCTGTGGTATGTTCTAGGTTACATGGAGGCCAAGAAAATGCTCAAGAAAGGTGAAACGATACTGATGATCAGCCTTGG GGCAGGTTTTAAGTGCTACAATTGTGTGTGGAAGGTTATGAAGGACATGGAGGATACAAATGTCTGGAAAGACTGCATAGATCATTACCCTCCAAACACC TTAGCTAACCCTTTCTCTGAGAAGTTCGATTGGATCAATGATGAAAGCATGAGATTTGCCAGGCATTTTTTTGTATTAACAAGTTAA
AA sequence Show only first row Show all	>Potri.019G091600.1 pacid=42774430 polypeptide=Potri.019G091600.1.p locus=Potri.019G091600 ID=Potri.019G091600.1.v4.1 annot-version=v4.1 MELFLAFCLLLLFYAISKLCKLAYQKRDQRCYMLSYQCQKDAEDRKLDTGSVSSGIGEETYCPRNVIEGREESATLMDALSEMDDIIFDTLDKLFAKTGV SPSEIDIIVASVSLFSPAPSLSARVIKRYKMRKDIKAFNLSGMGCSASVVAVDLVKQLFKTYRNSFAIVVSTESIGPNWYSGKEKSMMLSNILFRTGGCS MLLTNNRALKENALLELTCAVRTHIGSDHEAYSSCIQIYQERAGAKALTMILRVLLPKVLPLSEMLRYKISYYRNKITKRSTPKGIAGPGLNLKSGIDHF CVHPGGRAIIDEVGKSLALNDHDLEPARMALYRFGNTSSGGLWYVLGYMEAKKMLKKGETILMISLGAGFKCYNCVWKVMKDMEDTNVWKDCIDHYPPNT LANPFSEKFDWINDESMRFARHFFVLTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.019G091600 [exp]	0	1
AT4G09190			F-box and associated interacti...		Potri.005G254500 [exp]	3.87	0.8544
AT3G52130			Bifunctional inhibitor/lipid-t...		Potri.001G271000 [exp]	9.21	0.8120
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033800 [exp]	9.94	0.9177
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.008G052900 [exp]	12.40	0.7586
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G022600 [exp]	12.56	0.8171
					Potri.004G166400 [exp]	22.04	0.8670
AT3G54070			Ankyrin repeat family protein ...		Potri.011G016966 [exp]	26.98	0.8627
AT1G55570		SKS12	SKU5 similar 12 (.1)		Potri.001G000600 [exp]	33.58	0.7347
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G148200 [exp]	39.79	0.8417
AT4G09190			F-box and associated interacti...		Potri.005G254633 [exp]	47.64	0.8444

Compare expression of checked genes

Potri.019G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.